Nothobranchius furzeri (turquoise killifish): 107387136
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Entry
107387136 CDS
T05163
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107387136 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfu03400
]
107387136 (lig3)
Enzymes [BR:
nfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107387136 (lig3)
DNA repair and recombination proteins [BR:
nfu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
107387136 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
107387136
NCBI-ProteinID:
XP_015817403
UniProt:
A0A1A7ZKL1
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All DBs
Position
sgr11:complement(42549390..42585145)
Genome browser
AA seq
1001 aa
AA seq
DB search
MQRNLVLLVDKSVCSGRHPFRTLVRRQQFSKLCQANLVASKQPSSLVRSKSSGEICHFTY
ISHNQRLLPWKFLQCLLSNQPDMSEQRFLVEYAKRGTAGCKKCKDKIQKGIVRIGKVVPN
PFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKELINKHVSDLM
AKVNASPKKKVQSKLNTSAQLMSPPADPSVNAPRKFSGFTAAKVGSSSAPSVSSSSSKAG
EGSALSKQLCDPQHKDCLFREFRKLCATVAENNSYNSKTQIIEKFLKKGTGGDKFHGDLY
LTVKLLLPGVVKSVYNLNDKQIVKLFSRSFQCNHDDMVRDLEQGDVSETVRMFFEDCKSF
PPAAKSLLTIQEVDASLTRLAQLTKEDEQQSELEAIAKKCTSNDLKCIIRLIKHDLKMNA
GAKHVLDAVDPNAHDAFKASRNLGDVIERVLRNQQEASNGSGPRKLLTVEASLLTPVQPM
LAEACKSVDYAMKKCPNGMYSEIKYDGERVQVHKSGNTFSYFSRSLKPVLPHKVAHFKEY
IPQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNGVS
LMERPLSERRKFLNDNMVEVPNRILFSEMKYVTRAADLADMITRVIREGLEGLVLKDIKG
SYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPASKKWC
TVTKCSGGYDDAMLARLQKELDVIKISKDPSKIPGWLKIVKNYYPDFLIRDPEQAPVWEI
TGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKSATNLHQLKELFRISKEHCDFKVTAGP
SESNDEKGSSGGDSGGSSPFPSSTGKAPPKKTTSSSPPKPKAVKSEPRPPGSEAPSAKKV
KKSEQSVHSNRKAASQLLEPKNDKTLLDIFSGIKLFLPVSVHDCDKLRRYFVAYDGDLVP
DYDPTSATHTLAEPEEDSKAQKVSTSWIWECIRKRRIVPPC
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagaaatctggttctacttgttgacaagtccgtctgttctggccgacatcctttt
cgtacgcttgtcagacgtcaacaattctcaaaattgtgccaggccaaccttgtcgcctct
aaacaaccatcttcacttgtccgttcaaagtcttcaggagaaatttgtcattttacctac
atatcccataaccaacgtcttctcccctggaagttcctgcagtgtcttttgtccaaccag
cccgatatgtcggaacagagattcctggtggaatatgccaaacgcggcaccgcaggctgt
aagaaatgcaaggacaaaattcagaagggcatagtacggatagggaaggttgtgccgaac
cccttcagcgagtctgcgggggagatgaaggagtggtatcacgtgaagtgcatatttgag
aagctggaaagggcacgagctaccacaaagaagatagaggacatcacagacctggagggc
tgggaagaactgcaggatgaggacaaggagctcattaataaacatgtttcagatctgatg
gctaaagtcaacgctagtccaaagaaaaaggttcagtccaagttgaacacctcagctcag
ctgatgtcccctcctgccgacccgtcggtcaacgccccgcggaagttctcaggcttcacc
gctgccaaggtcggcagctccagcgctcccagcgtgtcctcgtcctcctccaaagccggc
gaaggcagcgccctgtccaagcagctgtgtgacccacagcacaaggactgcctcttcaga
gagtttaggaaactctgcgccaccgtggctgaaaacaacagctacaacagcaagactcag
atcatagagaagttcctgaagaagggcacggggggagataagttccacggagatctttac
ctgactgtgaagttgctgctgccaggcgtcgtaaaaagcgtttacaacctaaacgacaag
cagattgtaaaactcttcagccgaagtttccaatgcaaccatgacgacatggtgcgggat
ctggagcagggcgacgtgtccgagactgtgagaatgttcttcgaggactgtaaatctttc
ccacctgctgccaagagcctcctcacgatccaggaagtagacgcatccttgacccgcctc
gctcagctgaccaaggaggacgagcagcagagcgagctggaggccatagctaaaaaatgc
accagcaatgacctgaaatgcatcatccggctcattaaacacgacctgaagatgaacgcc
ggagccaagcacgttttggacgctgtggatccaaacgcccatgatgccttcaaggcctcc
cgtaaccttggtgacgtgattgagcgggtcctgaggaatcagcaggaggcgtccaatggg
tcaggacccaggaagctgctgaccgtggaggcctctctcctgacccctgtccagccgatg
ctggcggaggcgtgcaaatctgtcgactacgccatgaagaaatgtcccaacgggatgtac
tctgagatcaagtacgacggggagcgcgtgcaggtccacaagagtggaaacaccttcagc
tacttcagccgcagcctcaagccggttctgccacacaaagtggcccatttcaaagagtac
atcccccaggcttttcctggaggccacagcatgattctggatgctgaagttcttctcatt
gacacaaaaaccagcaagccgctgccctttgggactttaggcgtccacaagaaagctgcc
tttcaagatgccaacgtgtgcctttttgtttttgactgcatctacttcaacggcgtgagt
ctgatggagaggcctctaagtgaacgcagaaagttcctgaatgacaacatggtggaagtc
cccaacaggatcctcttctctgagatgaaatacgtcacgagggcagcagatctggctgac
atgataactcgagtcatcagagaaggactggaaggcctggtgctgaaagacataaagggc
agctacgagccggggaaacgccactggctgaaggttaaaaaggactacctaaacgaaggt
gccatggcggacacggctgacctggtggtgctaggcgccttctacggaaagggctccaac
gggggcatcatgtccagcttcctgatgggctgctacgacccagcctccaagaagtggtgc
acagtcaccaagtgctctggaggctacgatgatgccatgttggctcggctccagaaggag
ctggatgtgatcaaaatcagcaaggaccccagcaagattcctggatggctgaaaatcgtc
aagaactattatccagatttccttatccgtgatccagagcaagcgccagtctgggagatc
accggtgcagagttctccaaatcagagatgcacaccgccgatggcatctccatccgcttc
ccccgcatgactcggatccgagatgacaaggactggaagagtgccaccaacctgcaccag
ctcaaggagctgttccgcatatccaaggaacactgtgactttaaggtgacggccgggccg
tccgagtccaacgatgagaaaggctcgtcaggaggagacagtggaggaagttccccgttc
ccatcatccaccgggaaagctccacccaagaagacgaccagcagcagccctcctaaacca
aaggcagtgaaatcagaacctcgtcctccaggatcagaagctcctagcgcaaagaaggtg
aagaagagcgaacaaagcgttcatagtaacagaaaagcagcgtctcagctgctggaacca
aagaacgacaagacgctgctggacattttcagcgggataaagctcttcctgcccgtctcc
gtgcacgactgcgacaaactcaggagatactttgtggcatatgatggagacctggtaccg
gattacgatcccacctccgccacacacacgttggctgagccagaggaggacagcaaggct
cagaaagtctccacctcctggatctgggagtgcatccgtaagagacgcatcgttcctccc
tgctga
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