Nitrosococcus halophilus: Nhal_3142
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Entry
Nhal_3142 CDS
T01198
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nhl
Nitrosococcus halophilus
Pathway
nhl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Nhal_3142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nhl03400
]
Nhal_3142
Enzymes [BR:
nhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Nhal_3142
DNA repair and recombination proteins [BR:
nhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Nhal_3142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADE16194
UniProt:
D5BZI0
LinkDB
All DBs
Position
3222643..3226119
Genome browser
AA seq
1158 aa
AA seq
DB search
MLSALNLASLSPALPQQAGDHRHLGRLYGSSFGLILATSARHHLGPILVITPDTITANRL
EDELRFYCSGQQDFPILHFPDWETLPYDIFSPHQDIISERLATLYQLPRLEHGVLIVPVS
TLMQRLAPREYLETHGLLVATGDRLHLETWRKQLEKGGYRCVSQVMEHGEVAFRGSLIDL
FPMGSRVPYRIDLFDDEVDSLRSFDPETQRSSEQVEQIQLLPAREFPLTEEAITQFRKNY
RSTFSGDPQRSLVYREVSEGTLPPGIEYYLPLFFDRTDTLFDYLPENTLAVTLERVHPAA
DTFWKEISDRYEQRRHDLERPLLNPQQLYLQTGQLFTALKTLPRISLQPSELEEKAGHQN
FATEAPPQLTINARASQPLETLNRFIENFEGRVLFAAETTGRRETLRELLKDSGIQPHPF
ENWEAFLQDKERFGITVAPLQQGLLLGKPQLAVIAEPQLFGEQAMQQRRRKGRTRDTDAV
VRDLVELSIGAPVVHEEHGVGRYLGLQTLEVGKVRTEFMALEYADGDKLYVPVSSLHLIS
RYTGASPEAAPLHKLGSGQWERAKRKARERVRDVAAELLAIYAQRAARKKPALPPPDSHY
AAFARDFPFEETPDQADAIEAVIADLTSEKPMDRLVCGDVGFGKTEVAMRAAFIASQAGK
QVAVLVPTTLLAQQHHQSFKDRFADWPVRVEVMSRFRSRKEQETIVNGIADGRVDIVIGT
HKLLQENIHFKDLGLVIIDEEHRFGVRQKERMKALRAEVDVLTLTATPIPRTLHMSLSGL
RDLSIIATPPARRLAIKTFVRQWDDSLLREALLREIKRGGQIYFLHNEVESIEKMAHRVQ
TLFPEAKVGVAHGQMRERELEQVMLNFYHRRFNVLVCTTIIETGIDIPSANTIIIHRADK
FGLAQLYQLRGRVGRSHHRAYAYLIVPPRSVMTADAVKRLEAIESLEELGAGFTLATHDM
EIRGAGELLGKGQSGQMQEIGFSLYNDLLERAVNSLKSGQTLDLEQPTEHGPEVDLHAPA
LIPEDYLPDVHTRLVLYKRIATAKSNQELKELQVEMIDRFGLLPEATKTLFAIHELRLKA
SEIGIRKIEASTRGGRLHFQPEPNVDPMAIINLIQKQPSVYKLDGQEKLRFIQELPDTQA
RLEALERLLKVLTMKKAA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgttatccgctttaaatcttgcctctttatcgccagccttgccccagcaggcaggcgat
catcgacatcttggccggctttacggaagcagtttcggcctgatattagcaaccagcgcc
cgccatcacctggggcctatcctggtgattacgccagacacaattacagcaaaccggctg
gaggatgaactccgcttctattgcagcggccaacaagattttcccatccttcattttccc
gattgggaaaccctcccctatgacatcttctccccccatcaagacattatctccgagcgt
ctggccaccctctatcaattgccccggttagagcacggagtgctgatcgtcccagtatcc
actttgatgcaacgccttgcgccccgggaatacctagaaacccatggcctattagtggca
accggcgatcgccttcacttggaaacttggcgaaagcaactggaaaaggggggatatcgt
tgcgtctcccaggtgatggagcacggcgaagtcgcgtttcggggttctcttatcgacctg
ttccccatgggcagtagggttccctaccgaatcgatctttttgatgacgaagtggatagc
ctccgtagctttgacccggaaactcaacgttcctcagaacaggtagaacagatccaacta
ctaccagcccgggaattccccttgacagaagaggccattacccagttccgaaaaaattac
cgcagcacctttagcggcgatccccaacgcagccttgtttaccgcgaggtgagcgaaggg
actctccccccaggaattgagtattatctaccgctttttttcgaccgtaccgatactcta
ttcgattatcttccagaaaataccctagcggtcaccttagagagggtccacccagcagct
gacaccttttggaaagaaatcagcgatcgctatgagcaacgtcgccacgatttagaacgt
cccctgctcaacccccagcaactctaccttcaaacgggacagctctttaccgcccttaaa
actctcccccggatcagcctgcaaccctctgaactagaggaaaaagcaggtcatcaaaat
tttgccaccgaagcgcctccccaactcacgatcaatgcccgcgcctctcaacccttggaa
accctcaaccggtttatagaaaattttgaaggacgggtattatttgccgccgaaaccacc
gggcgtcgggaaaccttacgggaactgctcaaagacagcggaatccagcctcaccccttt
gaaaattgggaagcttttctccaagataaggaacgctttgggatcaccgtagcaccgctg
caacagggcttactgctgggaaaaccacagcttgcggtgattgccgagcctcaattgttc
ggcgagcaagccatgcagcaacgccgccgcaaagggcgtacccgggatacggatgcagtg
gtccgggatctggtggagctttccataggcgccccggtggtccatgaagaacatggtgtg
ggccgctatttaggattgcagaccctggaagtcgggaaagtccgcactgaatttatggcg
ctggaatacgccgatggggacaaactctacgttcccgtctcctcccttcacctgattagc
cgttacaccggtgcttcccccgaagcggctcccctgcataaattgggctccggccaatgg
gagcgggccaagcgcaaggcccgggagcgagtccgggacgtagccgccgagctactggct
atttatgcccagcgagcggcgcggaaaaagcccgctctacctcctcccgattcccactat
gccgccttcgctagggactttccttttgaagaaaccccagaccaagccgatgccattgag
gcggtgattgctgacctcacttcagagaaacccatggaccgtctcgtctgtggggatgtg
ggttttggtaaaaccgaagtggccatgcgggctgcctttatcgcctcccaggcaggcaaa
caagtggcggtgctcgtacccaccacgctcctggcccagcaacaccatcaaagctttaaa
gatcgttttgccgattggccagtgcgggtagaggtcatgtcccgcttccgctcccgcaaa
gaacaagaaactatagtcaatggcattgccgatggccgggtggatattgtgattggcacc
cataaactgctacaggaaaacatccacttcaaggatctgggactggtcattattgatgaa
gaacaccggtttggagtccgacaaaaagaacgaatgaaggccctgcgggccgaggtggac
gtactcaccttaaccgcgacccctattcctcgaactctgcatatgtccctttcaggactt
cgggatctttccattattgccaccccaccggcgcgccgcctggctattaaaacttttgta
cggcagtgggatgatagtctcctccgggaagctttgctgcgggaaatcaaacgagggggg
caaatttattttctccacaatgaagtggaaagcatcgaaaaaatggcccaccgggttcaa
accctcttccccgaggccaaagtgggcgttgcccacggtcaaatgcgggaacgggagcta
gaacaggtgatgctaaatttttaccaccggcgctttaatgtcctggtttgcaccactatc
atcgaaacggggattgatattcctagtgccaataccatcatcatccatcgagccgataaa
tttggcctggctcaactttatcagttgcgtggacgggtgggacgctcccaccatcgggcc
tacgcttatttgattgtccctcctcgctcggtgatgaccgcagatgcggtcaaacgccta
gaggccatcgagtccctggaagaactaggagccggttttaccctggccacccacgatatg
gagatccgaggagccggagaactgctgggtaaaggccaaagtggacaaatgcaagaaatc
ggttttagcctttacaatgacttactggagcgggcggtcaatagcttaaaatctgggcaa
accttggatttggagcagcctacagaacatggtccagaggtcgatctccatgcccccgcc
ctcattccggaagattaccttcctgatgtgcatacccgattggtgctctataaacggatc
gccaccgccaaaagcaaccaagaactgaaggaactccaggtggagatgattgatcgcttt
ggcttattgccagaggccactaagactttatttgctatccatgaacttcgcctgaaagcc
agtgaaatcggcattcgcaaaatcgaggcaagtacccgcggcggccggctccacttccaa
ccagagcctaacgtggatcccatggcaatcattaacttgatacagaagcaacctagcgtc
tataaactagatggccaggaaaaactccgctttatccaagaactgccggatacccaggcg
cgcttagaggccttagaaagactgcttaaggtattaaccatgaaaaaggcagcctaa
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