Nitrosospira lacus: EBAPG3_007500
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Entry
EBAPG3_007500 CDS
T04907
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nlc
Nitrosospira lacus
Pathway
nlc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EBAPG3_007500 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nlc03400
]
EBAPG3_007500 (ligD)
Enzymes [BR:
nlc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EBAPG3_007500 (ligD)
DNA repair and recombination proteins [BR:
nlc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EBAPG3_007500 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ARO89059
UniProt:
A0A1W6STE2
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Position
1689733..1692276
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AA seq
847 aa
AA seq
DB search
MALRNSLKAYREKRNFSITPEPDEMGKDAEANDAALSFVVQKHWATRLHYDFRLELDGTM
KSWAIPKGPSFDPHDKRMAIHVEDHPISYNRFEGRIPAGQYGAGKVIIWDKGTWVPLQDP
RNGYRDGKLKFELRGYKLKGHWTLVRMKNREENKQEPWLLIKEKDEYVRSSSEYSVVDEL
PDSVAGLESRHLNKTARSSASAREKHNRAVGLPEKAVEADLPSTLQPELAILVDELPAHP
ADWLYEIKFDGYRILCRVGDGKIQLFTRNGNDWSHKLPDLVKALGKMDLKPGWLDGEIVV
PGEKGIPDFQALQNAFDSSRTQGILYYLFDIPFYDGYDLRDVPLIERRAFLKTFFEKSPP
DPVRFSETFDAPARDIVASACRMGLEGVIGKRKTSTYVSRRSSDWVKLKCGRRQEFVIGG
YTDPQGSRIGLGSLLLGVYDEDKKLRYAGNVGTGFSDKTLHDLEARLKKIVASRSPFHEA
SGIDGKAHWVLPLLVAEISFGEWTRDGRIRHSVFHGLRTDKKAEAVTREKPMHPMTEKPT
IMTSIPASLRVTHPERIIDPSSGFTKMELIRYYSLIAPLMLEHLKGRPVSLVRAPDGITG
QLFFQKHWEKEKMQGVNQLDPALDPGHEPLLEISTAEGLLSAAQMNVIEFHTWNATKNAI
DKPDRMTFDLDPGEGVTWKLVQESAQLVRVFLDELGLRSFLKTSGGKGLHVAVPIKRLLD
WDTVKDFSQAIVQHLARTIPQRFVSKSGAQNRVGKVFIDYLRNGFGATTVCAWSVRARQG
LGVSVPLAWEELESLASASHWSASNIHERLDKGNEPWADYGATKQSILPAMKIFGFKPGK
ETSRQVK
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgcggaattcactcaaagcctaccgggaaaaacgtaatttctcgataacaccc
gagccggatgaaatgggcaaggatgctgaggcaaacgacgcggcgttgtcgtttgtggtg
cagaaacactgggcgacccggctgcattacgacttcaggctggagcttgatggaacaatg
aaaagctgggccattcccaagggccccagctttgatccccacgacaagcgcatggcaatt
catgtcgaggatcatcccatttcctacaatcgtttcgaaggccggattccagccggacag
tatggggcgggcaaggttatcatctgggacaagggaacgtgggttcctctgcaggatccc
cgcaacggctatcgcgatggcaagttgaaatttgaactgcgcgggtacaaactcaagggc
cactggacgctggttcgcatgaaaaaccgggaggagaacaagcaggagccgtggctgctt
atcaaggagaaggatgagtatgttcgttcatcaagcgagtacagcgttgtggatgaactg
cccgatagcgttgccggactcgaatcccgccatttaaacaaaacagccaggtcatcggcc
agcgcaagagaaaaacacaaccgtgccgtcgggttgcccgagaaagcggttgaagctgat
cttccttcaaccctgcaacccgagcttgcaatccttgtagatgaactgcccgctcatcca
gccgactggttatacgaaatcaagtttgatggttatcgaatcctttgcagggtcggggac
gggaagattcagctattcacgcgtaacggtaacgattggtctcacaagctgcctgacctg
gtgaaggcattaggcaaaatggaccttaaaccggggtggctggatggtgaaattgtggtg
cccggcgagaagggcattccagactttcaggccttgcagaatgccttcgatagttcccgg
acgcagggtatcctatactatctgttcgatatcccgttttatgacggatacgatttgagg
gacgttcccctcatcgaacggcgtgcgtttctgaaaacattctttgagaaatcgcccccg
gacccggtgcgcttcagcgagacatttgatgcccccgcccgggatatcgttgcgtcggct
tgccgcatgggactggaaggcgtcatcggtaaacgcaagacctcgacgtatgtctcacgc
cgctcctctgattgggtaaagctcaagtgcggccggcgccaggaattcgtgatcggcggc
tacacggatccacaaggctcccgcataggcttgggttcgcttttgctcggcgtttacgat
gaagacaaaaagctccggtacgccggcaatgtgggtacgggctttagcgataagactctt
cacgatcttgaagcgaggttgaaaaaaatcgtggcgtcacggagtcctttccatgaagcg
tccggcatcgatgggaaagcccattgggtgctgccgctactggttgcggaaatttccttc
ggcgaatggactcgggacggccggatacgtcactcggtttttcatggtttgcgcaccgat
aagaaagcggaggctgtcacgcgggagaaacccatgcatccaatgacggaaaaacccacg
ataatgacctcaattcctgcctcgctgcgagtcacccatcccgaacgcataatcgatcct
tccagcggcttcaccaagatggaactcatacgctactattcattgattgctcccttgatg
ctggagcatcttaaaggaaggccggtatcattggtgcgcgcgccggatggcattacaggc
cagttatttttccagaagcattgggaaaaagagaaaatgcagggggtgaatcagctcgat
ccggcactcgatcccgggcatgagccattgcttgaaatatcgacggctgaaggtctgctg
tccgccgctcaaatgaacgtgatcgaatttcacacctggaatgccacaaagaatgctatc
gacaaacctgatcgaatgacgttcgatctcgatcccggcgaaggagtgacgtggaagctt
gtccaggaatcagcacagcttgtgcgtgtatttcttgacgaattgggattgaggtctttt
cttaaaaccagcggcggaaagggtttgcatgttgctgttccaatcaaaaggttactcgac
tgggacacggtgaaagatttttctcaagcgattgttcagcatcttgccaggaccattccg
cagcgtttcgtgtcaaaaagcggagcgcagaatcgtgtgggaaaggtcttcattgattat
ttgcgcaacggctttggcgcaaccaccgtgtgcgcctggtcagttcgcgcccgtcagggt
ttgggcgtctccgtgcccctcgcgtgggaagaactggagtcgcttgcgagcgccagccac
tggtcggcctcgaatattcatgagcgcctggacaaaggcaatgagccttgggcagattat
ggcgctacaaagcagtcgatactgccggcgatgaaaatatttggattcaaacccggcaaa
gagacatcccgtcaagtcaagtga
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