Neisseria meningitidis G2136 (serogroup B): NMBG2136_1188
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Entry
NMBG2136_1188 CDS
T01929
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nmd
Neisseria meningitidis G2136 (serogroup B)
Pathway
nmd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NMBG2136_1188 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmd03400
]
NMBG2136_1188 (mfd)
Enzymes [BR:
nmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NMBG2136_1188 (mfd)
DNA repair and recombination proteins [BR:
nmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NMBG2136_1188 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
ERCC3_RAD25_C
UB2H
HemY_N
AAA_30
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ADY93892
LinkDB
All DBs
Position
1204847..1208974
Genome browser
AA seq
1375 aa
AA seq
DB search
MTYPIPKPREKSRWPNLSQGSLPLALVRYLPHKRLKVVLTQDAEQALRLQTAWRFFRPHD
TAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAG
RTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSEMPYRIDLF
DDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDGNPNDAAVY
KAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDALFVSLGDVHAEANRFWSDVKSRYAM
AQGDETYPPLLPQHLYLSADVFAGRLKNYGQVLPDVSGKEHALPDLAVNRQSDEPLQALK
DFQTAFEGRILLCAESLGRRETMLGFLQQNGLKAKSVSDWQGFLSAHEPLMITVAPLAYG
FKLGGLQSPNQQQTTSASEGEGDAVTDQTEFSASATNPLPSPLPQEREQSAAAVSDSLKA
AAVSTESSLPLGTSNLHGQIRQQPAPSPVGEGWGEGKAVAAQTEFSAAATNPLPNPLPQE
REQSAAAVSDDLKTKSSLHPVANNLHGQIRQQPTPSPVGEGWGEGKAVAAQTEFSAAATN
PLPSPLPQEREQSAAVVSDSLKAAAVSTESSLPPGKSNLHGQIQQQPAPSPVGEGWGEGK
AVAAQSAIAVITESDLYQYVARSRVHNRRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIG
RYMGLITMDLGGETNEMMLLEYAGEAQLYVPVSQLHLISRYSGQAHENVALHKLGSGAWN
KAKRKAAEKARDTAAELLNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAA
VIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFAD
RFADFPVKVASLSRFNNSKATKAALEGLADGTVDIVIGTHKLVQDNIRFKSLGLVIIDEE
HRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVK
PFSEGSVREAVLRELKRGGQVFFLHNEVDTIENMRERLETLLPEARIGVAHGQLRERELE
QVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAY
AYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSGEMIQVGFT
LYTEMLKQAVRDLKKGRQPDLDAPLGITTEIKLHSPALLPESYCPDIHERLVLYKRLAVC
ETVQQINAIHEELVDRFGLPEQPVKTLIESHHLRLMAKELGIDAIDAAGEAVTVTFGKNN
NVDPTEIILLIQNDKKYRLAGADKLRFTAEMENIEVRINTVKNVLKTLQNRCLPK
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgacctaccccatccccaaaccccgtgaaaaatcccgttggcccaatctttcgcaaggc
tcgctgcccttggctttggtgcgttatctgccgcacaagcggctcaaggtcgtgctgacc
caagatgcggaacaggcgttgcgccttcagacggcatggcggtttttccgtccgcacgac
acggcggtgttcttgccggactgggaaacgctgccttacgagcgtttttctccgcatcag
gatttggtgtcggagcggctctcggcgttgtggcagattaagagcggcgcggcggacgtg
ttgtttgtaccggttgccacggcgatgcagaagctgccgcccgtgccgtttttggcgggg
cgcacgttttggctgaaaacaggacagactttggatataggccgtctgaaaaccgatttg
gtagatgcgggctacaaccatgtttcccatgttgttgcggcgggcgagtttgccgtgcgc
ggcggcattgtcgatttgttccccatgggcagcgaaatgccctaccgcatcgatttgttt
gacgatgaaatcgacagcatcaaaacctttgatacggacacgcagcgcaccatctccccc
gtttccgaaatccgcctgctgccggcgcacgaattccccaccgacagcgaggcgcaaaaa
atcttccgcagccgcttccgcgaggaagtcgatggtaatccgaacgatgcggctgtatac
aaagcagtaagcaacggccacttcggtgcgggcgtggaatattacctgccgctgtttttt
gaaaacgagctggaaacgctgtttgactatatcggcgaagacgcgctgtttgtctctttg
ggcgatgttcacgccgaggcaaaccgcttttggagcgacgtcaaatcgcgttacgccatg
gcgcagggcgacgaaacctatccgcctttgcttccacagcatttgtatctctctgccgat
gtttttgcaggccgtctgaaaaactacggacaggtgctgcccgatgtttccggcaaggaa
cacgccctccccgaccttgccgtcaaccgacaatccgacgagcctttgcaggcattgaag
gattttcagacggcgtttgaaggacggattttgctgtgcgccgaaagtttgggacggcgc
gaaaccatgctcggcttcttgcagcaaaacggtttaaaagccaaaagcgtgtctgattgg
caaggcttcttgtcggcacatgagccgctgatgattacagtggcaccgttggcttacgga
ttcaaactgggcggattgcaatccccgaaccagcagcaaactacttccgcctccgaagga
gaaggcgatgcggttaccgaccaaaccgaattttccgcatccgcaacaaaccctctccct
agccctctcccacaggagagggaacaaagtgcagccgccgtttcagacagtctgaaagca
gccgccgtttcaaccgaaagcagcctgcccctcggtacaagtaatctgcacgggcaaatc
cgacagcaacctgccccttcccccgtgggggagggttggggagagggcaaagcagttgcc
gctcaaactgaattttccgcagccgcaacaaaccctctccctaaccctctcccgcaggag
agggaacaaagtgcagccgccgtttcagacgacctgaaaaccaaaagcagcctgcatccc
gtcgcaaataatctgcacgggcaaatccgacagcaacctactccctcccccgtgggggag
ggttggggagagggcaaagcagttgccgctcaaaccgaattttccgcagccgcaacaaac
cctctccctagccctctcccacaggagagggaacaaagtgcagccgtcgtttcagacagt
ctgaaagcagccgccgtttcaaccgaaagcagcctgccccccggtaaaagtaatctgcac
gggcaaatccaacagcaacctgccccctcccccgtgggggagggttggggagagggcaaa
gcagttgccgctcaaagtgccatcgccgtcatcaccgaatccgatctctaccaatacgtc
gcccgttcgcgcgtccacaaccgccgcaagaaacacgccgccgtttcagacggtctgttg
cgcgaccttgccgaaatcaacatcggcgaccccgtcgttcacgaagaacacggcatcggg
cggtatatgggcttgatcacaatggatttgggcggcgaaaccaacgaaatgatgttgctt
gaatatgcaggcgaagcgcagctttatgtgcctgtttcgcaactgcatttaatcagccgc
tactccggtcaggcgcatgaaaacgtcgccctgcacaagctcggcagcggcgcgtggaac
aaagcgaaacgcaaagccgccgaaaaagcgcgcgataccgccgccgagttgctcaacctc
tacgcccaacgcgctgcccaatcgggacacaagtttgaaatcaacgagttggactatcag
gcgtttgccgacggtttcggctacgaggaaaccgaagaccaggccgccgccatcgccgcc
gtgattaaagacctgacacaggcgaagccgatggaccgactcgtgtgcggcgatgtcggc
tttggcaaaaccgaagtcgccctgcgcgccgcgtttgtggcggtgatgggcggcaaacag
gtcgccgtactcgccccaaccacgcttctagtcgagcagcacgcgcaaaactttgccgac
cgtttcgccgatttccccgtgaaagtcgccagcctttcgcgtttcaacaacagcaaagcc
accaaagccgcactggaaggcttggcggacggcacggtcgacatcgttatcggcacgcac
aaattggtgcaggacaacatcagattcaaaagcttaggtttagtgattatcgatgaagaa
caccgcttcggcgtgcgccagaaagaacagctcaaacgcctgcgcgccaatgtcgatatc
cttaccatgaccgccacgccgattccgcgcaccctcagcatggcactcgaaggcctgcgc
gacttctcgctgattaccactgcaccgagccgccgcctcgccgtcaaaacctttgtcaaa
cccttcagcgaaggcagcgtgcgcgaagccgtattgcgcgaactcaaacgcggcggacaa
gtgtttttcctgcacaatgaagtggatacgattgagaatatgcgcgagcggttggaaacc
ctgctgcccgaagcccgcatcggcgtggcgcacggacaactgcgcgagcgcgagctggaa
caagtgatgcgcgactttttgcagcaacgatttaacgtgttgctctgttccaccatcatc
gaaaccggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgacaaattc
ggactggcgcaactgcaccagcttcgcgggcgtgtcggccgcagccatcaccaagcctac
gcctacctgctcacgcccgaatacatcaccaaagacgcagaaaaacgcctcgacgccatc
gcggcagcagacgaactcggcgcaggtttcaccctcgccatgcaggatttggaaatccgc
ggcgcaggcgaaatcctcggcgaagggcagtccggcgaaatgatacaggtcggcttcacg
ctctacaccgaaatgctcaaacaagccgtgcgcgatctcaaaaaaggccgccaacccgac
ctcgacgcgccgctgggcatcaccaccgaaatcaaactgcacagccccgccctactgccc
gaaagctactgccccgacatccacgagcgtctcgtcctctacaaacgcctcgccgtctgc
gaaaccgtgcagcaaatcaacgccatacacgaagaactcgtcgaccgcttcggcctgccc
gaacaacccgtcaaaacccttatcgaaagccaccacctgcggcttatggcaaaagaattg
ggtatcgatgccattgatgcggccggcgaagcggtaacggtaaccttcggtaaaaacaat
aatgtcgatccaaccgaaatcatcctgctgattcagaacgacaaaaaataccgccttgcc
ggcgccgataagctgcggtttaccgcagagatggaaaatatcgaggtcagaatcaacacc
gtaaaaaacgttttaaaaaccttgcaaaacagatgcctgcccaaataa
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