Neisseria meningitidis M04-240196 (serogroup B): NMBM04240196_0204
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Entry
NMBM04240196_0204 CDS
T01948
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nmq
Neisseria meningitidis M04-240196 (serogroup B)
Pathway
nmq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMBM04240196_0204 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmq03019
]
NMBM04240196_0204 (rne)
03009 Ribosome biogenesis [BR:
nmq03009
]
NMBM04240196_0204 (rne)
Enzymes [BR:
nmq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NMBM04240196_0204 (rne)
Messenger RNA biogenesis [BR:
nmq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NMBM04240196_0204 (rne)
Ribosome biogenesis [BR:
nmq03009
]
Prokaryotic type
rRNA processing factors
NMBM04240196_0204 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_Tnp_IS1
Motif
Other DBs
NCBI-ProteinID:
ADZ00741
LinkDB
All DBs
Position
complement(203172..205931)
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AA seq
919 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDY
GTDRHGFLPFKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDIPNGMSIIARTAGIGRSAEELEW
DLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVTE
FMSYVMPGNIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSID
VNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVL
RDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHV
LRIIQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHY
EINRIRTDDVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAA
PEKKTSWWDSFKAWLKRIFGGSETQAAPAAETSEKRSTANRSGSRANNRRQNPRRSKREG
SKVEVREVAGKTAGQEARADKAETRNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVA
DAAPSETEVQTGKRRRNGSRSERGQTAPETATVAETTVQTAENTPSEPHTAEDKGSKPKS
ERNRRERDSRDAKERRERNNQRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVF
GETDANAPITVSIADPVAERDLPTASPAVSNGDAPVYDAAEKIRRATAAILPEGATPKAE
AQEMPSETATFTAAAEQARETAQTGGLVLIETDPAALKAWAAQPEVQAGRGLRRSEQPKP
SEVATVPAEEMIQVETRQG
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttattcaacgcaacgcaggccgaagagctgcgcgttgccattgtcgat
ggccaaaaccttttggacttggacatcgaaacgctgggcaaagaacagcgtaaaggcaat
atctacaaaggtatcattacccgcatcgagccgtcgctggaagcgtgtttcgtggattac
ggaaccgaccgccacggcttcttgccgtttaaagaagtctcccgctcatacttccaagac
tacgaaggcggacgcgcgcgcatccaagacgtgctcaaagaaggcatggaagtcatcgtc
caagtcgaaaaagacgagcgcggcaacaaaggcgccgcgctgaccaccttcatcagcctc
gccggacgctatctggtattgatgccgaacaacccgcgcggcggcggcgtatcccgccgt
atcgaaggtgaagagcgtcaagagttgaaagccgccatggcggaactcgacattccgaac
ggcatgagcatcatcgcccgtaccgccggcatcggccgcagcgcggaagagttggaatgg
gacttgaactacctcaaacaactctggcaggcgattgaagaagcaggaaaagcgcatcac
gacccctacctgctctttatggaaagctcgctgctgatccgagccatccgcgactatttc
cgccccgacatcggcgagattttggtggacaatcaagaagtttacgaccaagttaccgag
ttcatgagctacgtcatgccgggcaatataggccgtctgaaactctacgaagaccacacg
ccgctgttttcccgcttccaaatcgaacatcaaatcgaaagcgcgttctcgcgcagcgtc
agcctgccctccggcggcgcgattgtgatcgaccataccgaagccctcgtttccatcgac
gtgaactccgcacgcgccacacgcggcgcggacattgaagacaccgcgttcaaaaccaat
atggaagccgccgaagaagtcgcccgacaaatgcgcctgcgcgacttgggcggtttggtc
gtcatcgacttcatcgatatggaaaaccccaaacaccagcgcgatgtggaaaacgtcctg
cgcgacgcgctcaaaaaagaccgcgcccgcgtgcagatgggcaaactgtcccgtttcgga
cttttagaattgagccgccaacgtttgaaaccggctttgggcgaaagcagccatgttgcg
tgtccgcgctgtgccggcaccggcgtgattcggggcatcgaatccaccgccctgcacgtt
ttacgcatcattcaagaagaagcgatgaaggacaacaccggagaagtgcgcgcacaagtg
cccgtcgatgtcgccaccttcctgctgaacgaaaaacgcgccgagctgtttgcgatggaa
gagcgtttggatgtcaacgtcgtcctgattccgaacatccacctcgaaaatccgcactac
gaaatcaaccgcatccgcaccgacgacgtagaagaagacggcgaaccgagctacaaacgc
gtcgccgagcctgaagaagacgaatccgccaaaccgttcggcggcgaaaaagccaaagcc
gcccgtcccgaacccgccgtcaaaggcgtgcgccacaccagccccgccccgactgccgcc
cccgagaaaaaaacctcctggtgggacagcttcaaagcttggctcaaacgcattttcggc
ggcagcgaaacccaagccgcgcccgctgccgaaacctccgaaaaacgcagcacggcaaac
cgcagcggcagccgcgccaacaaccgccgccaaaacccgcgccgcagcaaacgcgaaggc
agcaaagtagaagtccgcgaagtggcaggcaaaactgccggacaggaagcgcgtgccgac
aaagccgaaacgcgcaacaacggcaaccgccgccgcaacgaacgcggcgaccgtgccgcc
ggacgcgccgacgaagcggaaatccaagaccgcaacatacagcctgccgcaaccgttgca
gatgccgcaccgtccgaaaccgaagtgcaaaccggaaaacgccgccgcaacggcagccgc
agcgaacgcggccaaaccgcgccggaaaccgccaccgttgccgaaacaaccgttcagaca
gcggaaaacacgccgtccgaaccgcataccgcagaagacaaaggcagcaagcccaaatcc
gaacgcaaccgccgcgaacgcgacagccgagatgccaaagaacgccgcgagcgcaacaat
cagcgcgaccgccgtcaaaacggcaaaaaacgcaatattccgtctgccgccaaaatcgag
cagtacctgaatattcacgacaccgccgacaaagtccgttccgccgccgcgcacgttttc
ggcgaaaccgacgcaaacgcgccgattactgtcagcattgccgatccggttgcagaaagg
gatcttccgacagcatctcccgccgtttcaaacggcgacgcaccggtttatgatgcggcg
gaaaaaatccgccgtgccaccgccgccatcctgcccgaaggcgcgacaccgaaagccgaa
gcacaggaaatgccgtctgaaaccgcaacctttacggctgcggcggaacaggcacgggaa
accgcacaaaccggcggactcgtcctgatcgaaaccgaccctgccgcattgaaggcatgg
gcggcacaacccgaagtccaagccggacgcggtttgcgccgttccgaacagcccaagccg
tctgaagtcgcaaccgtccctgccgaagaaatgatccaagtcgaaacccggcaaggctga
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