Nitrosococcus oceani: Noc_2331
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Entry
Noc_2331 CDS
T00281
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
noc
Nitrosococcus oceani
Pathway
noc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
noc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Noc_2331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
noc03021
]
Noc_2331
03400 DNA repair and recombination proteins [BR:
noc03400
]
Noc_2331
Enzymes [BR:
noc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Noc_2331
Transcription machinery [BR:
noc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Noc_2331
DNA repair and recombination proteins [BR:
noc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Noc_2331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
ABA58789
UniProt:
Q3J8Q7
LinkDB
All DBs
Position
complement(2673930..2678009)
Genome browser
AA seq
1359 aa
AA seq
DB search
MPYSLTEKKRIRKDFSKLHSILKTPFLLTIQIGSFLDFLQMDVPPGKRKDKGLHAAFKSV
FPIKSYTEYAELQYSSYHLGVPSFEVKECQVRGLTYAAPLRVKLRLVIYDKESPASEQVV
KDVKEQEVYMGEIPLMTPKGNFVINGTERVIVSQLHRSPGVIFEHDKGKTHSSGKLLFSA
RIIPYRGSWLDFEFDPKDCVYARIDRRRKLLATILLRALGYSTEEILIMFFETISVKRQG
SSYLLDLVPQRLRGESLPFDIASPDGEVIVEAGRRVTARHIKQMEKAGMKTLPAPKEFLI
GKTLARDLIDAGTGEVLAKANDEITAELMTALEDANIQAFDLIYTNDLDRGSFISDSLRL
DPTTTPLEAQMEIYRVMRPGEPPTKEAAQNLFQNLFFNPERYDLSPVGRMKFNRRLGKED
ITGPSILSKEDIVDVIKTLVDIRNGYGSVDDVDHLGNRRVRSVGEMAENQFRVGLVRVER
AVRERLSLAESEGLMPQELINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARINQYGFIETPYRK
VVDGKVAGEVDYLSAIEEGQYVIAQANAAADEEGRLIDMLVSCRHKNEFTLLPPEKVQYI
DVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAETPLVGTGMEQVVARDSG
VMVVARRGGIVDSVDAARVVVRVNDEETASDEPGVDIYNLIKYARSNQNTCINQSPLVKP
GDTVAIGDVLADGPSTDMGELALGQNLLVAFMPWNGYNFEDSILISERVVEEDRFTSIHI
EELTCFARDTKLGPEEISSDIPNVSEAALSKLDEAGIVYIGAEVKPGDILVGKVTPKGET
QLTPEEKLLRAIFGEKASDVKDTSLRVSSGMQGTVIDVQVFTRDGVEKDTRALEIEEMEL
AKIKKDLRDEFRIVETDIYQRLEKVLVGKTVEGGPAELKAGTQITQNYLADLPRERWFEI
RLRSEEAGRQLESVAGQLKEQRVAMDEKFQQQRAKLTSGHDLPPGVQKMVKVYLAVKRRV
QPGDKMAGRHGNKGVISTIVPIEDMPYMEDGTPVDIVLNPLGVPSRMNIGQILETHLGWA
AKGLGRKIGALLESGEQASELRVFLDRIYNASGKKEDLNSLSDEEVLELANNLKDGVPMA
TPVFDGASEQEIKTMLELADLPTNGQTNLYDGRSGEAFARPVTVGYMHMLKLNHLVDDKM
HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALESYGAAYTLQEMLTVKSDDVNGRTK
MYKNIVDGDYRMEAGMPESFNVLTKEIRALGIDIELEQD
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgccctactcgttgaccgagaagaagcgtattcgtaaggattttagcaagctccatagt
atactgaaaactcctttcttgttaactatacaaatcggctctttcctagattttctacaa
atggatgtgcctcctggtaagaggaaagataaagggttgcatgccgcatttaagagtgtt
tttcctatcaagagctatacagagtatgctgagctacagtatagcagctatcatcttggt
gttccctcatttgaggttaaggaatgccaagtacgcggtctaacttacgcggcgcctctg
cgggttaagttgcgccttgttatttatgacaaagaatctcctgctagcgagcaagtggtt
aaggatgtaaaagagcaggaagtgtacatgggcgagatccccttgatgacgccaaaaggg
aattttgttattaatggaacagagcgggttatcgtctctcaattgcaccgttctccagga
gttatcttcgaacatgataagggaaagacccattcctcaggaaaattacttttttctgct
aggataatcccctatcgtggatcttggctcgattttgaatttgatcctaaggattgcgtc
tatgcgcgtattgatcgtcgacgtaaattactagcgactatattgttacgcgccctcggt
tacagcaccgaggaaattctaattatgttctttgaaacgatttcggttaagcgccaaggt
tcaagctatttattagacttggtgcctcagcggcttcggggtgagtcgctgccttttgat
atcgctagcccagatggcgaggtcatcgttgaagcaggacgaagggttactgcgcgccat
atcaagcagatggaaaaggctggaatgaagactctacccgcgcctaaggagtttttaata
ggaaaaactctagctcgggatctgattgatgctggtaccggagaagtattagctaaagcg
aatgatgaaattacagcggaattaatgacggccctagaagacgctaatatacaagccttt
gatcttatttatactaacgatttggaccgtggctcctttatctccgatagtttgcgctta
gatcctaccactacaccactagaagcccagatggaaatctatcgtgtaatgcgtcctgga
gagccgccgactaaggaagcagcgcagaatctatttcaaaatttgtttttcaacccagaa
cgttacgatctctctccggtgggccgaatgaaatttaatcgccgtctggggaaagaagat
attactggcccaagtatattatccaaagaagatattgtcgatgttataaagactctagtc
gatatccgtaatggttacggcagtgtggatgatgttgatcatctgggcaatcgccgggtg
cgtagtgttggagaaatggcggaaaatcaatttcgcgtaggtttggtgcgagtcgagcgg
gcggtgcgggagcgtttgagtttagcggagtcggaggggttaatgcctcaggaattgatt
aacgcaaaacccgtatcggccgcggttaaggagttttttggctctagccagttatcgcag
tttatggatcagaataatcctttatccgaggtgactcataaacgacgggtatctgcgcta
ggaccaggaggattgactcgtgagcgggctggttttgaggtgcgtgatgtgcatcctact
cattacggacgcgtctgccccatcgagactccggaaggccccaatattggtttgattaat
tctttagcggtttatgcccgaattaatcaatatggttttattgaaacaccataccgaaaa
gtagtggatggcaaggtggctggcgaagtggactatctttcggctattgaggaaggacag
tacgtaattgctcaggcgaatgcggctgcggatgaagaagggcgcctcattgatatgtta
gtttcttgccgtcacaagaatgaatttacacttctaccacctgaaaaagtgcagtacatt
gatgtatcacctaaacaaatcgtatcggtagcggcatctttaattccttttttagagcac
gatgatgccaaccgtgcattgatgggatctaacatgcagcgccaggcagtgcccaccttg
cgggcggaaactcctctagtaggtactggtatggagcaagttgtagctcgtgattcagga
gtgatggtggttgctcgccgtggcggtatcgtagattctgtggatgcagctcgcgttgtc
gtacgagtcaatgacgaagaaacggcttccgatgagcccggagttgatatttataacctc
attaagtatgcccgctcgaatcaaaacacatgcatcaaccagagtccgttagtaaagccg
ggcgatacggtggctataggtgatgtgctggctgatggcccttcgacagacatgggtgaa
ttagctttggggcagaatcttcttgtcgcctttatgccttggaatggttataactttgag
gattctatccttatttccgagcgggtggtggaagaagatcgctttacttcgattcatatt
gaagagctgacttgctttgctcgggatactaagttaggaccagaggagattagcagcgat
attccgaatgtaagcgaggcggcgttatctaagctggatgaggcgggtattgtttatatt
ggtgctgaggtgaaacccggcgatattttggttggcaaggtaactcccaaaggggagact
caattgacaccggaggaaaagctcttacgagctatctttggggaaaaggcatctgatgta
aaggacacatctctacgagtgtcttcaggtatgcagggtaccgtcattgatgtccaggtc
ttcacccgtgatggcgtggaaaaggatactcgggccttagagatagaggagatggagctt
gctaaaatcaaaaaggatttgcgggatgaatttcgtattgtagagactgatatttatcaa
cgcctagagaaagtgttagtaggtaagacagtcgaaggaggaccggcagaattaaaagcg
ggaacccaaattacccaaaattaccttgctgatttacccagggaacgatggtttgagatt
agactacgtagcgaggaggctggtaggcagctggaatcagttgctgggcagcttaaggaa
caacgggttgcaatggatgaaaaattccagcagcaacgtgccaagctcacttccgggcat
gacctcccccctggtgtccaaaaaatggtgaaggtctatttagccgtaaagcgccgtgtc
caacccggtgataagatggcgggtcgacatggaaataagggagtgatttccaccatcgta
cctattgaagacatgccctatatggaagatgggactccagtagatatcgtgcttaatcct
ctaggggtgccttctcggatgaatattgggcagatcttagaaacccatctgggatgggcg
gcaaagggcttgggtcgaaaaattggcgctctccttgagtcgggagaacaggcttctgaa
ctgcgtgttttcttagatcggatatataacgctagtggcaagaaagaagacctaaattct
ttgagcgatgaagaggtattggagcttgcaaataacctgaaggatggggttcctatggcg
acaccggtattcgatggcgcttccgagcaagaaattaaaactatgctggagttggctgac
ttgcctactaatggacagacaaatctttatgatggtaggagtggagaagccttcgcccgt
ccagtaacggtaggatatatgcatatgcttaaattgaatcatttagttgatgataagatg
catgctcgttcgacgggtccttatagcttagttactcagcagcctttgggggggaaagcc
cagtttggcgggcagcgttttggtgagatggaggtatgggccttagaatcctacggtgcg
gcctatactttgcaggaaatgcttactgtgaaatccgacgatgtgaacgggcgcaccaag
atgtataaaaacatcgtagatggtgattaccgtatggaagcgggtatgccggaatctttt
aatgtattgaccaaagaaattcgtgccctcggtatcgatattgaactggaacaagattaa
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integrated database retrieval system
