Natrinema pellirubrum: Natpe_0173
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Entry
Natpe_0173 CDS
T02425
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
npe
Natrinema pellirubrum
Pathway
npe03030
DNA replication
npe03410
Base excision repair
npe03420
Nucleotide excision repair
npe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Natpe_0173
03410 Base excision repair
Natpe_0173
03420 Nucleotide excision repair
Natpe_0173
03430 Mismatch repair
Natpe_0173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npe03032
]
Natpe_0173
03400 DNA repair and recombination proteins [BR:
npe03400
]
Natpe_0173
Enzymes [BR:
npe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Natpe_0173
DNA replication proteins [BR:
npe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Natpe_0173
DNA repair and recombination proteins [BR:
npe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Natpe_0173
NER (nucleotide excision repair)
GGR (global genome repair) factors
Natpe_0173
MMR (mismatch excision repair)
DNA ligase
Natpe_0173
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Natpe_0173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
RNA_ligase
5_3_exonuc
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AGB30115
UniProt:
L0JEZ7
LinkDB
All DBs
Position
complement(165543..167621)
Genome browser
AA seq
692 aa
AA seq
DB search
MPAADENEENPYLREPPTDFASIEDLSEDEATEQVELLREAVREHDRRYYVENDPIISDR
TYDALFSRLRDLEAAFDLDHPDSPTRRVGGEPIESFDTVEHVAPMLSIEGSGEEEDIREF
DERVRREVGDVDYVCEPKFDGVSMEVVYEDGRLERAVTRGDGREGDDVTENARTIGSVPQ
RLRGDYPEFLAVRGEVYMPKDAFQAYNRERIERGEDPFANPRNATAGTIRQLDPTVVAER
PLAVFYFDVLEASDLADSHRDELERFPDYGLRTNDRVEVVGDIEDAIDYRDRLLEARDDL
DYEIDGVVIKVDDREAREELGRTARHDRWAFAYKFPARAEVTTIADVAVQVGRTGRLTPV
ALLEPVDVGGVTVSRASLHNPEEIAEKNVNIGDTVRVQRAGDVIPYVEAVLEKGSEGHYE
LPDRCPVCDSPVERDGPMAFCTGGLGCDAQLRRSIEYYAGDDGLDLEGLGEKSVRQLVDA
GLLESVADLYELDREALTDLEGWGEQSAENLLAEIAASREPPLADFVSALGIPLVGPTTA
RELAREFGTFAALREAAESEPERLEGVDDVGETVAETIHDFFTSEANAAVVDAVLDHVSP
QEVDVETGGDELAGQTFVFTGSLEGVTRDEAQATVEAHGANATGSVSGNTDYLVAGENPG
ATKQGDARDNDVPILEEGEFRDLLAEKGIDLE
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgccgacgagaacgaagagaatccctacctccgggaaccgccgaccgatttc
gcgtcgatcgaggatctctcggaagacgaggccaccgagcaggtcgaactgctccgggag
gccgtccgggaacacgaccgccgctactacgtcgagaacgacccgatcatcagcgaccgg
acctacgacgccctgtttagccgcctgcgcgacctcgaggcggcgttcgacctcgaccat
cccgatagccccacccgaagggtcggaggcgagccgatcgagtcgttcgacaccgtcgaa
cacgtcgcgccgatgctctcgatcgagggcagcggcgaggaagaagacatacgcgagttc
gacgagcgggtgcgacgagaggtcggcgacgtcgactacgtctgcgagcccaagttcgac
ggcgtctcgatggaggtcgtctacgaggacggccgcctcgagcgcgctgtgacccgcggg
gacggccgcgagggcgacgacgtgaccgaaaacgcgcgcacgatcggctccgtaccgcag
cggctccgcggcgattaccccgagttcctcgcggtccggggcgaggtctatatgcccaag
gacgccttccaagcgtacaaccgcgaacgcatcgagcgcggcgaggaccccttcgccaac
ccgcggaacgccaccgccggcacgatccgccagctcgatccgaccgtcgtcgccgagcgc
ccgctcgcggtcttttacttcgacgtcctcgaggccagcgacctcgcggacagccatcgg
gatgaactcgagcggttccccgactacgggctgcggaccaacgaccgcgtcgaggtcgtc
ggagacatcgaggacgcgatcgactaccgcgaccggctgctcgaggctcgcgacgacctg
gactacgagatcgacggcgtcgtgatcaaggtcgacgaccgcgaggcccgcgaagagttg
gggcgaacggcccgtcacgaccgctgggccttcgcctacaagttccccgcacgcgcggaa
gtgacgacgatcgccgacgtggcggtccaggtcggccggacaggccggctgacccccgtc
gccctgctcgagccggtcgatgtcggcggcgtcaccgtctcgcgggcgagcctgcacaac
cccgaggagatcgccgagaaaaacgtcaatatcggcgacacggttcgcgtccagcgggcc
ggcgacgtgatcccctacgtcgaggcagtcctcgagaagggcagcgagggccactacgaa
ctgcccgaccgctgtcccgtctgtgacagccccgtcgagcgcgacggccccatggccttc
tgtaccggtggattgggctgtgacgcccagcttcgtcggtcgatcgagtactacgcgggc
gacgacggcctcgacctcgagggactcggcgaaaagagcgtccgccaactggtcgacgcg
ggcctgctcgagtcggtcgcggacctctacgaactcgatcgcgaggccctcaccgacctc
gagggctggggcgagcaaagcgccgagaacttgctcgccgagatcgcggccagccgcgag
ccgccgctcgccgacttcgtctccgcgctcgggatccccctcgtcggcccgacgacggcc
cgcgaactcgcccgcgagttcggtaccttcgcggccctccgcgaggccgcggaaagcgag
cccgaacggctcgagggcgtcgacgacgtgggcgagaccgtcgccgagacgatccacgac
ttctttacgagcgaggccaacgcagccgtggtcgacgccgtcctcgatcacgtctcaccg
caggaagtcgacgtcgaaaccggcggggacgaactcgcggggcagacattcgtcttcacc
ggttcgctcgagggcgtgactagggacgaagcccaagcaacggtcgaggcccacggggcc
aacgcgaccggcagcgtctcggggaacacggactacctcgtcgccggcgagaatccgggt
gcgacgaagcagggcgatgcgcgcgacaacgacgtcccgatcctcgaggagggcgagttc
cgggacctgctcgcggagaaggggatcgacctcgagtga
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