Novosphingobium sp. PP1Y: PP1Y_AT17152
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Entry
PP1Y_AT17152 CDS
T01515
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PP1Y_AT17152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npp03021
]
PP1Y_AT17152
03400 DNA repair and recombination proteins [BR:
npp03400
]
PP1Y_AT17152
Enzymes [BR:
npp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PP1Y_AT17152
Transcription machinery [BR:
npp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PP1Y_AT17152
DNA repair and recombination proteins [BR:
npp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PP1Y_AT17152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
IDH
Motif
Other DBs
NCBI-ProteinID:
CCA92598
UniProt:
F6IME6
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All DBs
Position
1806940..1807998
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AA seq
352 aa
AA seq
DB search
MTVNIKNWQELKKPNSLEIKPGPDPKLKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
ITSIKIENVLHEFSSLAGVHEDVTDIVLNVKQIALKMQGEGPKRLQLSATGPAEVKAGDI
AVTGDIEVMNKDLVICHLDEGATLNMELTADTGKGYVPAVGNRPVDAPIGLIPVDSLYSP
VRQVSYKVENARIGQELDFDKLSLSVETDGTVTPEDAVAYSARILQDQLALFVHFEDIAP
VGAPQMIGMAAAQPEESDTNQLNRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTEA
EMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaacatcaagaactggcaggaactcaagaagccgaacagccttgagatcaag
ccgggaccagaccccaagctgaaggcgactttcgtcgccgaacctctcgagcgcggcttc
ggcctgacgctcggcaatgcgctgcgtcgcgtactgctctcctcgcttcagggcgcggcg
atcacctcgatcaagatcgagaacgtgctgcacgagttctcttcgcttgccggtgtgcat
gaagacgtcacggacatcgtcctgaacgtcaagcagatcgcgctcaagatgcagggcgaa
ggcccgaagcgtctgcagctttcggcaaccggtccggccgaggtcaaggctggcgacatc
gccgtcacgggtgacatcgaggtcatgaacaaggacctcgtgatctgccacctcgacgaa
ggtgcgacgctgaacatggaactgactgccgacaccggcaagggctacgtccccgccgtc
ggcaaccgtcccgtcgatgcgccgatcggcctgatcccggtcgactcgctctactcgccg
gtccgccaggtcagctacaaggtcgagaacgcccgtatcggccaggagctggacttcgac
aagctgagcctgagcgtcgagaccgacggcacggtgaccccggaagatgccgtggcctat
tcggcgcgcatccttcaggaccagctggccctgttcgtccacttcgaggacatcgccccg
gtcggcgctccgcagatgatcggcatggccgctgcgcagcccgaggaaagcgacaccaac
cagctcaaccgttacctcctcaagaaggtcgacgagcttgaactgtcggtgcgttcggcg
aactgcctcaagaacgacaacatcatctacatcggcgatctcgtgcagaagaccgaggcc
gagatgctccgtacgccgaacttcggccgcaagtcgctcaacgagatcaaggaagtcctt
tcctcgatgggcctgcgcctcggcatggacatcccgggctggccgcccgagaacatcgaa
gagatggccaagaagctcgaacaggagctccttggataa
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