Novosphingobium sp. PP1Y: PP1Y_AT4161
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Entry
PP1Y_AT4161 CDS
T01515
Name
(GenBank) AAA family ATPase, CDC48 subfamily protein
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
npp
Novosphingobium sp. PP1Y
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npp03019
]
PP1Y_AT4161
03009 Ribosome biogenesis [BR:
npp03009
]
PP1Y_AT4161
04131 Membrane trafficking [BR:
npp04131
]
PP1Y_AT4161
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npp04147
]
PP1Y_AT4161
Messenger RNA biogenesis [BR:
npp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
PP1Y_AT4161
Ribosome biogenesis [BR:
npp03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
PP1Y_AT4161
Membrane trafficking [BR:
npp04131
]
SNARE
SNARE associated proteins
Others
PP1Y_AT4161
Autophagy
Aggrephagy
Other aggrephagy associated proteins
PP1Y_AT4161
Exosome [BR:
npp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
PP1Y_AT4161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_22
CDC48_2
AAA_5
AAA_2
AAA_14
AAA_33
TIP49
nSTAND3
IstB_IS21
AAA_18
NACHT
AAA_28
RNA_helicase
AAA_7
AAA_17
Mg_chelatase
AAA_24
Vps4_C
DUF815
Sigma54_activat
AAA_3
Zeta_toxin
AAA_30
AAA_19
Parvo_NS1
AAA_25
TsaE
AAA_11
bpMoxR
ABC_tran
NB-ARC
ATPase
PhoH
Viral_helicase1
MCM
Motif
Other DBs
NCBI-ProteinID:
CCA91369
UniProt:
F6IHB8
LinkDB
All DBs
Position
complement(431281..433596)
Genome browser
AA seq
771 aa
AA seq
DB search
MADAPPQVDERTVRLQVAAARQEESGQGIARMSRGSLSAIGAMEGDVLEITGKSVTVAQA
VLAYPEDEGLEVIRLDGLQRVNAEVGSGDHVTVRKGESRPAQRVVFAPAQKEMRLQGPSA
ALKRNFAGRPMVQGDLVATTGQQQVADIPPQLRRMFNAPAYALTQIRLNVVSTTPRGIVH
IDENTEVELREVFEEAEARRGDINYDDVGGMGDTIRQLREMVELPLRYPELFTRLGVAPP
KGVLLHGPPGTGKTRLAQAVANESEANFFSINGPEIMGSGYGDSEKALREVFDEATKAAP
AIIFIDEIDSIAPKRSQVHGEAEKRLVAQLLTLMDGLNSRAHVVVIAATNRPEAIDEALR
RPGRFDREIVIGVPDESGRREILSIHTRGMPLGDKVDLKELARTTHGFVGADLAALAREA
AIEAVRRIMPQIDLEARTIPPEVLENLSVTREDFIEALKRIQPSAMREVMVQVPNIGWAD
IGGLDEAQLKLKEGIELPLKNPEAFHKLGIRPAKGFLLYGPPGTGKTLLAKAVAKEAEAN
FISIKSSDLLSKWYGESEQQIARLFARARQVAPCVIFIDEIDSLVPARGSGGGFGEPQVT
ARVVNTILAEMDGMEELQSVVLIGATNRPTLVDPALLRPGRFDELVYVGTPDTAGREHIL
GIHTSKMPLAEDVSLADIAERTERFTGADLEDVVRRAGLIAIRKGGADVLSVSMADFEEA
LEDSRATVTEEMENEYGRMKGELKKRAMEVAPIGFITPGMVESTRDRKHGD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccccaccccaggtggatgaacggacggtcaggctgcaagtcgcggccgcc
cggcaggaagagagcggccagggcattgcccgaatgtcgcgcggatcgctctcggcgatc
ggcgcgatggagggcgatgtgctagaaatcaccggcaagtcggtgacggtggctcaggcc
gttctggcctatcccgaagacgaagggctcgaagtcatccggctcgacggtctccagcgc
gtcaatgccgaagtcggttcgggcgatcacgtcacggtccgcaagggcgaatcgcgtccg
gcccagcgggtcgtcttcgcccccgcgcaaaaggaaatgcgcctgcagggcccctccgcc
gcgctcaagcgcaacttcgcgggccgtccgatggtccagggcgacctcgtcgccacgacc
ggtcagcagcaggtggccgacattcccccgcaactgcgccgcatgttcaatgcgccggcc
tatgccctgacgcagatccgcctgaacgtcgtttcgaccacgccgcgcggcatcgtgcac
atcgacgagaataccgaagtcgaactgcgcgaggtcttcgaggaagccgaagcccggcgc
ggcgacatcaactacgacgacgtgggcggcatgggcgataccatccgccagctgcgtgaa
atggtcgagctgccgctccgctaccccgagctgttcacccgactaggcgtcgcgccgccc
aagggcgtgctgctccatggtccgccgggaaccggcaagacccgcctggcgcaggccgtc
gccaacgagagcgaggccaacttcttctcgatcaacgggcccgagatcatgggctccggc
tatggcgacagcgagaaggccctgcgcgaggtgttcgacgaggcgaccaaggctgccccg
gcgattatcttcatcgacgagatcgattcgatcgcgcccaagcgcagccaggtccacggc
gaggcggaaaagcgtctcgtcgcccagctgctcacgctgatggacggcctcaacagccgc
gcccacgtggtcgttatcgcagcaaccaaccggcccgaggcgatcgacgaggcgcttcgc
cgtcccggacgcttcgaccgcgaaatcgtgataggcgtgcccgacgagagcgggcggcgc
gagatcctgtccattcacacccgcggcatgccgctgggcgacaaggtggacctcaaggaa
ctggcgcgtaccacgcatggcttcgtcggtgccgacctcgccgcgctcgcccgcgaagcc
gcgatcgaggcagtgcgccggatcatgccgcagatcgacctcgaagcgcgcacgatcccg
cccgaggtgctggagaacctctcggtcacccgcgaggacttcatcgaggcgctcaagcgc
atccagccttcggcaatgcgcgaagtcatggtgcaggtgcccaatatcggctgggccgat
atcggcgggctcgacgaggcgcagctcaagctcaaggaaggcatcgaactgccgcttaag
aaccccgaggcgttccacaagctgggcatccgcccggccaagggcttcctgctctacggc
ccgccgggcaccggcaagacgctgctggccaaggccgtcgccaaggaagccgaggcgaac
ttcatctcgatcaagtcctcggacctgctgtccaaatggtacggcgaaagcgagcagcag
atcgcccgactcttcgcccgtgcccgccaggttgccccctgcgtcatcttcatcgacgag
atcgacagcctcgtacccgcccgcggttcaggcggcggtttcggtgaaccgcaggtcacc
gcccgcgtggtcaacacgatcctggccgagatggacgggatggaggaactgcagtcggtc
gtcctgatcggcgcaaccaaccgcccgacgcttgtcgacccggcgctgctgcgccctggc
cgcttcgacgagctggtctatgtcggcacgcccgacacggccggacgcgagcacatcctg
gggatccatacctcgaagatgccgctggccgaagacgtctcgctggcagacatcgccgaa
cggaccgagcgcttcaccggcgcagacctggaagacgtggtgcgccgcgcgggcctcatt
gcaatccgcaagggcggcgccgacgtcctgtcggtaagcatggctgacttcgaggaagcc
ctggaagacagccgcgcgacagtgacagaggaaatggagaacgagtatggccgcatgaag
ggcgagttgaagaagcgcgcgatggaagtggcccccatcggcttcatcacccccggcatg
gtggaatcgactagagacaggaaacacggggactga
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