Nitrososphaera viennensis: NVIE_011940
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Entry
NVIE_011940 CDS
T03200
Symbol
cdc48-3
Name
(GenBank) Cell division cycle protein 48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nvn
Nitrososphaera viennensis
Brite
KEGG Orthology (KO) [BR:
nvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvn03019
]
NVIE_011940 (cdc48-3)
03009 Ribosome biogenesis [BR:
nvn03009
]
NVIE_011940 (cdc48-3)
04131 Membrane trafficking [BR:
nvn04131
]
NVIE_011940 (cdc48-3)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nvn04147
]
NVIE_011940 (cdc48-3)
Messenger RNA biogenesis [BR:
nvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NVIE_011940 (cdc48-3)
Ribosome biogenesis [BR:
nvn03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NVIE_011940 (cdc48-3)
Membrane trafficking [BR:
nvn04131
]
SNARE
SNARE associated proteins
Others
NVIE_011940 (cdc48-3)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NVIE_011940 (cdc48-3)
Exosome [BR:
nvn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NVIE_011940 (cdc48-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
AAA_16
RuvB_N
AAA_2
AAA_22
AAA_5
AAA_14
TIP49
AAA_33
nSTAND3
AAA_18
AAA_28
RNA_helicase
IstB_IS21
Mg_chelatase
Zeta_toxin
AAA_24
AAA_7
NB-ARC
AAA_17
DUF815
SLFN-g3_helicase
Sigma54_activat
Vps4_C
Parvo_NS1
AAA_3
TsaE
ABC_tran
ATPase_2
AAA_30
PhoH
AAA_11
DUF5906
NACHT
NTPase_1
bpMoxR
AFG1_ATPase
Zot
Molydop_binding
UFD1
Motif
Other DBs
NCBI-ProteinID:
AIC15426
UniProt:
A0A060HPG6
LinkDB
All DBs
Position
complement(1009994..1012252)
Genome browser
AA seq
752 aa
AA seq
DB search
MSSANNKASLKVAEADARDVGRRIARIDPKVAARLDITTGDALEIISPASKRKTTVLNWP
AYQRDNGKELIRIDGYARNKLGIGIGDTVDIRKVEAKPAQSVALAPTEPLRILGAEDYLA
GFLQGQLVTKGDTIPLTIMGQRVDLVVISTSPSGPVIIEPSTEVSVSEESANAAAAAKEA
GIPAITYEDIGGLRDEVTKVREMIELPLRHPELFRRLGVEAPKGVILHGPPGTGKTLLAK
AVANETQANFYSIGGPEIMSKYYGESEERLRNIFEEAQKNAPSIIFIDELDSIAPKREEV
SGEVERRVVAQLLSLMDGLNARGKVVVIGATNRINAIDPALRRPGRFDREIEIGVPDRDG
RLEVLQIHTRGMPLDKDVNLEKLADISHGFVGADLQALAKEAAMRALRRVLPEIDVSAES
IPGETLNKIIVKMQDFMDVVKEMEPSAMREVFVEVPDVQWADVGGLQGVKQELREAVEWP
LKYQGLFSYSDATPPKGILLYGPPGTGKTLLAKAAANESEANFISIKGPELLSKWVGESE
KGVREIFRKARQAAPCIIFFDEIDAIAPVRGGSFGDSHVTERVISQMLTELDGLEILTNV
VVIAATNRPDIMDPALLRPGRFDRLLYVPPPDKESRLQILKIHTKKKPLDKDVDIGKLAG
DMEGYTGADIASVASAAVMLALREHIAKYSDDAKEAESHAKDLKVKMQHFRDAMKKVRPL
SSQELDMYKNIAEKFGMPMSSRATGAAYAGSA
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcagccaacaacaaagcaagcctgaaggtggcagaggcagacgcgcgggacgtc
ggaaggaggatcgcaaggatagaccccaaggtggccgcaaggcttgacataacgaccggc
gacgcattggaaatcatatcgcctgccagcaagagaaagaccaccgtcctcaactggcct
gcgtaccagagggacaacggaaaagagctgataagaattgacggctatgccagaaacaag
ctcgggattggcatcggcgacaccgtggacattcgaaaggtggaggcaaagccggcgcag
agcgttgccctggctcccacggagcccctgcgcatcctgggcgcagaagactatctcgca
gggttcttgcagggacagctcgtcacaaagggggacactattccgctcaccatcatgggg
cagagggtcgacctggtcgtcatctctacaagcccgtccgggcctgtcataatcgagcct
tcgacggaggtgtcggtgtccgaggaaagcgccaacgcggctgcagcagcaaaagaagcc
ggaatccctgccatcacgtacgaggacattggcggcctgagggacgaggtgacaaaagta
agggagatgatagagctccccctgcgccacccggagcttttcaggaggcttggagtcgag
gcgccaaagggcgtcatactgcacggcccgcccggcactggtaaaacattgcttgcaaaa
gcggtggccaacgagacccaggccaacttttactcgataggcgggccggagatcatgagc
aagtactacggcgaaagcgaggagaggctgcgcaacatctttgaggaggcgcaaaagaac
gcgccgtcaataatcttcatagacgagctggactctatcgcaccaaaaagggaggaggtc
agcggcgaggtcgagcgcagggtggtggcgcaacttctgtcgctgatggacgggctgaat
gcaaggggcaaggtggtcgtaatcggcgccaccaacaggataaacgcgatcgaccccgcg
ctcagaaggccgggcaggtttgaccgcgaaatagagatcggggtgccagacagggacggc
aggctggaagttctgcagatccacacgagggggatgccccttgacaaggacgtgaacctg
gaaaagctagcagacatctcgcacggctttgtcggggccgacctgcaggcgcttgcaaag
gaagccgcgatgcgcgcgctgcggcgcgtccttccagagatcgacgtgtctgcggaaagc
atccccggcgaaacactgaacaagattattgtaaagatgcaagatttcatggacgtggta
aaggagatggagccctctgcaatgagggaggtgtttgttgaagtcccggacgtccagtgg
gccgacgtgggcggcctgcaaggcgtaaagcaggagctccgcgaagccgtggaatggccg
ctaaagtaccaggggctgttttcctattctgatgcaacccctccaaaaggcatcctcctg
tacgggcctccgggcaccggcaagacgctccttgccaaggcggccgcaaacgaaagcgag
gccaattttatcagcataaaggggccggagcttttgagcaagtgggtcggcgagtccgaa
aaaggcgtcagggagatatttagaaaggcaaggcaggcggcgccttgcatcatattcttt
gacgagatagacgccatagctcctgtccggggagggagttttggcgactcgcacgtaaca
gagagggtgataagccagatgctgacagagcttgacggcctcgagatactgacaaacgtc
gtggtgatagccgctacaaaccggccggacatcatggaccctgcgctcctcaggcccggc
aggtttgacaggctgctgtacgtcccgccccctgacaaggagtcgaggctgcagatactc
aaaatccacacaaagaaaaagccgcttgacaaggacgtagacatcgggaagcttgcaggg
gacatggaaggctacaccggcgcagacattgcgtcggtcgcgtctgccgccgtgatgctg
gctctgcgtgagcacattgcaaaatacagcgatgacgccaaggaagcagaaagccatgcc
aaggacctgaaagtaaaaatgcagcatttcagggacgcgatgaaaaaggtaaggcccctg
tcctcgcaggagctggacatgtacaagaacatcgcagagaaattcgggatgccgatgtcg
tcgagagccactggggcagcttatgctggatcggcctag
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