Octadecabacter antarcticus: OAN307_c43920
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Entry
OAN307_c43920 CDS
T02538
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
oat
Octadecabacter antarcticus
Pathway
oat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OAN307_c43920 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oat03021
]
OAN307_c43920 (rpoA)
03400 DNA repair and recombination proteins [BR:
oat03400
]
OAN307_c43920 (rpoA)
Enzymes [BR:
oat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OAN307_c43920 (rpoA)
Transcription machinery [BR:
oat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OAN307_c43920 (rpoA)
DNA repair and recombination proteins [BR:
oat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OAN307_c43920 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF211
Glyco_hydro_65C
Motif
Other DBs
NCBI-ProteinID:
AGI69760
UniProt:
M9RIV4
LinkDB
All DBs
Position
complement(4328297..4329313)
Genome browser
AA seq
338 aa
AA seq
DB search
MIHKNWAELIKPTQLDVQPGNDPSRQATVIAEPLERGFGLTLGNALRRILMSSLQGAAIT
AVQIDNVLHEFSSISGVREDVTDVVLNLKGVAIRMEVEGPKRLQVQAKGPGVVTAGDISE
SAGIEILNKDHVLCHLDEGAELYMELTVNTGNGYVAADKNKPEDAPIGMMAIDAIYSPVK
KVSYDVQPTREGQVLDYDKLTMKVETDGSITPDDAVAFAARILQDQLSIFVNFDEPESAQ
TASDDDGLEFNPLLLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKS
LNEIKEVLSGMGLHLGMDVEDWPPDNIEDLAKKFEDSF
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgatccacaaaaactgggctgaactgatcaagccgacacaattggacgtgcagccgggt
aatgacccgtcacgtcaggcgactgttatcgctgaaccgctagagcgtggcttcggcctc
acactcggcaacgctttgcgccgcatcttgatgagctcgcttcagggcgctgccatcacg
gctgttcagatcgacaacgttttgcacgaattctccagtatttctggtgttcgcgaagac
gtcaccgacgtggtcttgaacctcaaaggtgtcgcgatccgcatggaagtcgaaggcccg
aagcgtttgcaagtgcaagccaagggcccgggcgttgtcacggcaggcgacatttcggaa
tctgctggcatcgaaatcctcaacaaggaccacgtgttgtgccaccttgatgaaggcgct
gaattgtacatggaactgacggttaacactggcaacggctatgtggctgcagacaagaac
aagcccgaagatgcgcccatcggtatgatggccatcgacgcgatttattcgccggtcaaa
aaagtcagctatgacgtacagccgacccgtgaaggtcaggtgctcgactatgataagctg
acgatgaaagtcgaaacagacggatctatcacgccggacgacgccgtggcatttgctgcg
cgtatcctgcaggatcagttgtcgatcttcgtgaacttcgatgagcctgagtccgcacaa
accgcatctgatgatgacgggctggaattcaatccgcttttgttgaagaaggttgatgag
cttgagctttcggtgcgttccgcaaactgcctgaagaacgacaatattgtgtacatcggc
gatctcattcagaaaactgaagcagaaatgctgcgcacaccgaacttcggtcgcaagtcg
cttaacgagatcaaagaagtgctgtcaggcatgggcttgcacctgggcatggacgtcgag
gactggccaccggacaacattgaagatcttgcgaagaaattcgaagactctttctaa
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