Afipia carboxidovorans OM5 (Goettingen): OCA5_c00510
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Entry
OCA5_c00510 CDS
T01617
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
ocg
Afipia carboxidovorans OM5 (Goettingen)
Brite
KEGG Orthology (KO) [BR:
ocg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocg03400
]
OCA5_c00510 (addB)
Enzymes [BR:
ocg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OCA5_c00510 (addB)
DNA repair and recombination proteins [BR:
ocg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
OCA5_c00510 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
AEI04785
UniProt:
F8C086
LinkDB
All DBs
Position
56179..59352
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AA seq
1057 aa
AA seq
DB search
MRLFNIPSSAPFLRTLLTALADGRLIEGFEARKNPERLAEATLYLPTQRACRMAREVFLD
VMEQDAVLLPRIVALGHVDEDELAFAQDEATEFPSLNVPDALDGLPRRLVLMRLVSAWAK
RLGSRELASAPLVAGGPASTLALADDLARLIDDMTTRGVDWHALNTLVPDDLDQYWKITL
DFLKIASEAWPAHLRESELIEPVARRDLLIAAEAARMAAAPGPFIAAGSTGSMPSTAKFL
HAVAQHPQGAVVLPGLDTDLDDEAWRAIGGVRDSTGRFAEHPLSSHPQYALHGLLDVFGV
DRKAVRALAEPSAHGRELIASEAMRPARETAQWHHRLADPDVTTRIEAGFDNLAIVEAAN
PEMEALAIATAMREARQFGKTTALVTPDRALARRVMAALGRWQLPYDDSGGDSLMDTPAG
IFARLAAETVTSELAPPTLLALLKHPLLRLGAPAGGWTKATANLELAVLRGTRPAPGCKG
LQAAFAAFVEEWSKTQRKELSTLHPSEPRARLTPDDIESATRALDALVSALAPLESVVRG
THDFATLAQRHYETITHLSRDNDGLIAAFAGTDGQQLASAFNELAPPNENDVPAPTHIAL
EAADYPDLFATAFANRVVRRPENSDAALRIYGLLEARLTQCDRVILGGLVEGVWPPAPRI
DPWLSRPMRHELGLDLPERRIGLTAHDFAQLLGAKEVIITHATKVGGAPAVASRFLHRMK
AIAGTKAWTEAEKRGADYVRYAEALDAPDSITPVAQPAPTPPVALRPLQMSVTEIEDWLR
DPYTIFAKRILKLTLLDPVDLPLTAADRGSAIHNALGDFTQKHSKTLPEDIVAELRFCGE
EHFAALMAHPEARALWWPRFLRIADWFAGWELRRRAETVEIAAEQRGEIAIPLGDGREFR
LSARADRIELRADRTFAIIDYKTGQPPSNKQVQLGLSPQLTLEAAILRGGGFRHAFASLP
ANPSVSELVYVRLSGNNPAGKEQIVNLTPKGGDVQLPDDAADAALAKLTALIRKFDDPKQ
AYNSLALAMWSDRYGVYDDLARIKEWSVATHLGGGDA
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgcgccttttcaacattccctcctccgctccgttcctgcgcacacttttgacggcgctc
gcggacggccgcctgatcgaaggattcgaggcacgcaaaaatcccgaacgcctggcagaa
gcgacgctctacctgccgacgcagcgtgcttgccgcatggcgcgcgaggtatttctcgac
gtgatggagcaggacgccgtgctgctgccgcggatcgtcgcgctcggtcatgtcgacgag
gacgaactcgccttcgcgcaggacgaagcgacagagtttccttcactcaacgtgccggat
gcgctcgacggcctgccgcgccggctggtgctgatgcggctggtcagcgcatgggcgaag
cggctcggctcgcgcgaactggcctccgcgccgctcgtcgccggcggacccgcatcgacg
cttgcgcttgccgacgacctcgcacgcctgatcgacgacatgacgacgcgcggcgtcgat
tggcatgcgctcaatacgctggtgccggacgatctcgatcaatactggaagatcacgctc
gactttctcaagatcgcaagcgaggcatggcccgcgcatctgcgggaatccgaattgatc
gaacctgtcgcgcggcgcgaccttttgattgcagcagaggcagcgcggatggcggcagcg
cccggcccgttcatcgcagcgggctcgaccggttcgatgccgtcgactgcgaaatttctg
cacgccgtcgcgcaacatccgcaaggtgcggtggtgctgccgggtctcgacaccgatctc
gacgatgaggcatggcgcgcgatcggtggtgtgcgcgattccaccgggcgctttgccgaa
catccgctctccagccacccgcaatatgcgttacacgggcttctcgatgtgttcggcgtc
gatcgcaaggcggtgcgtgcgctggcagagccgtccgctcatggtcgcgaattgattgcg
tccgaggcgatgcgccccgcgcgcgaaaccgcgcagtggcatcaccgcctcgccgatccg
gatgtcacaacgcgcatcgaagcggggtttgacaatctcgccatcgtcgaggccgccaat
ccggagatggaggcgcttgcaatcgcaactgcgatgcgcgaggcgcggcagttcggcaag
accacggcgcttgtgacgccggaccgtgcgctggcgcgccgcgtgatggccgcacttggc
cgctggcaattgccatacgatgattccggcggcgactcgctgatggatacgccggccggc
atttttgcgcggctcgcggcggagactgtgacgagcgagctcgcgccaccaacattgctc
gcgcttctcaagcatcctttgctgcggctcggtgcgcctgcgggtggctggacaaaagcg
accgccaatctcgagctcgcggtgttgcgcggaacgcggcctgcacccggctgcaaggga
ttgcaggctgcatttgctgcattcgtcgaggaatggagcaagacacagcgcaaagaactc
tcgacgctgcatccgtccgagccgcgcgcgagattgacgccggacgacatcgaatctgcc
acacgcgcgctcgatgcgctggtttccgcactcgccccgctcgaaagcgtcgttcgtggc
acgcatgatttcgcaacgctggcgcagcgtcattacgagacgatcacgcatctgtcgcgc
gacaacgatggcctgatcgctgcattcgcaggcacggacggtcagcagcttgcatctgcg
ttcaatgaactagcgccgccgaacgagaacgatgtaccggcgccgactcatatcgcgctt
gaggctgccgactatcccgacctgttcgcgaccgcgtttgcaaatcgtgtcgtgcggcgc
ccggaaaattccgatgcagcgctgcggatctacggccttctcgaagcgaggctcacgcaa
tgcgaccgcgtcattctcggcggcttggtcgaaggcgtgtggccgcctgcgccgcggatc
gatccatggctctcgcggccgatgcggcacgagctcggtctcgacctgccggaacggcgc
atcggcctcaccgcgcacgacttcgcgcaactgctcggcgccaaagaagtcatcatcacg
catgcaaccaaggttggcggcgcgccggcggtggcctcgcgcttcttgcatcgcatgaaa
gcaatcgccggcacgaaggcgtggacggaagccgagaaacgcggcgcggattacgtccgc
tatgccgaagcactcgatgcaccggacagcattacacccgtcgcacaacctgcaccgacg
ccgccggtggcgctgcggccgctgcagatgtcggtgaccgagatcgaggactggctgcgc
gatccctatacgatatttgccaagcgcattctgaagctgacactgctcgatccggtggac
ctgccgttgacggccgccgatcggggctccgcgatccacaacgcgctcggggatttcact
caaaaacacagcaaaactctgccggaagatattgtggcagaattacgtttttgcggcgag
gagcacttcgcggcgctgatggcacatcccgaggcgcgggcactgtggtggccacgcttt
ctgcgcatcgccgactggttcgccggctgggaactcaggcgccgcgccgagactgtcgag
atcgccgccgagcagcgcggcgagattgcgattccgctcggtgacgggcgcgagttcagg
ctgagcgcgcgcgccgaccgcatcgagctgcgcgccgatcgcacctttgcaatcattgat
tacaagaccggccagccgccgagcaacaagcaggtgcagcttgggctgtcgccgcagctc
acattggaagcggcgatcctgcgcggtggcggattccgtcacgcctttgcatcgctccct
gcgaatccatcagtgagcgaactcgtttacgtccgcctgagcggcaataacccagcgggc
aaggagcagatcgtcaatctgacaccaaagggcggcgatgtgcagttgcccgatgacgct
gctgacgccgcgctcgccaagctcactgcgctcatcaggaagttcgacgatccgaagcaa
gcctacaattcgcttgcgctggcgatgtggtcggatcgctacggcgtctatgacgatctc
gcgcgcatcaaggaatggtcggtcgcgacgcatctcggcggaggcgacgcatga
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