Afipia carboxidovorans OM4: OCA4_c28250
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Entry
OCA4_c28250 CDS
T01967
Symbol
rpoD2
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
oco
Afipia carboxidovorans OM4
Pathway
oco02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OCA4_c28250 (rpoD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oco03021
]
OCA4_c28250 (rpoD2)
Transcription machinery [BR:
oco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OCA4_c28250 (rpoD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AEI03941
LinkDB
All DBs
Position
complement(3010071..3012197)
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AA seq
708 aa
AA seq
DB search
MATKAKTVAVKDKEKEQKAAETPEKDSADAPSPLLDLSDAAVKKMIKQAKKRGFVTFDQL
NEVLPSDTTSPEQIEDIMAMLSDMGINVSESDEADNEEEEKDEADDDTDNELVEVTSKAV
TETKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQ
AIIIWRDELNEGKIFLRDIIDLEATYAGPEGKGGVNTAMIAGPSGPDGQPTNAIVNGDGT
VQVMPAQAAAAQTAPQTATPFRPAPAAGDDASASEGEGDEDDEFENQMSLAAIEAELKPR
VVETFDKIASEYKKLRRLQEQDIANQLQSESLSPSQERKYKKLKDEIIVEVKSLRLNQAR
IDSLVEQLYDINKRLVSYEGRLFRLGDSHGVSREDFLKNYVGSELDPRWLNRVSKLSAKG
WKNFVAHEKDKIKDLRHEVQQLAALTGLEIGEFRKIVLGVQKGEREARQAKKEMVEANLR
LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIAD
QARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPL
SLETPVGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGI
GMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaaggcgaagacggtagcggtcaaggataaggaaaaagaacagaaggctgcc
gagacgcccgaaaaggattccgccgacgcgccgtcgcccttgctcgatctctccgacgcc
gccgtcaagaagatgatcaagcaggcgaagaagcgcggcttcgtcaccttcgaccagctc
aacgaagtgctgccctccgacacgacctcgcccgagcagatcgaggacatcatggcgatg
ctctccgacatgggcatcaacgtctccgagtccgacgaagccgacaacgaggaagaagag
aaggacgaggctgacgacgacaccgacaacgagcttgtcgaggtcacctccaaggccgtc
accgaaaccaagaagtccgagcccggcgagcgcaccgacgatcccgtccgcatgtatctg
cgcgagatgggcacggtggaattgctgtcgcgcgaaggtgaaatcgcgatcgccaagcgc
atcgaggccggccgcgaagcaatgatcgcggggctgtgcgaaagcccgctgaccttccaa
gcgatcatcatctggcgcgacgaactcaacgaaggcaagattttcctgcgcgacatcatt
gatctcgaggcgacctatgcgggtcccgagggcaagggcggcgtcaacaccgccatgatc
gcgggcccgtccggcccggacggtcagccgaccaacgccatcgtcaacggcgacggcacc
gtgcaggtgatgcccgcgcaggcggccgccgcgcagaccgcgccgcagaccgcgaccccg
ttccgcccggcgccggctgccggcgatgacgcctccgcctccgaaggcgagggggacgag
gacgatgagttcgagaaccagatgtcgctcgccgcgatcgaggctgaactgaagccgcgc
gtggtcgagaccttcgacaagatcgcatccgagtacaagaagctgcgtcgcctgcaggag
caggacatcgccaaccagctgcagagcgagtcgctctcgccgtcgcaggagcgcaagtac
aagaagctgaaggacgagatcatcgtcgaggtgaagtcgctgcggctgaatcaggcgcgc
atcgacagtcttgtcgagcagctctacgacatcaacaagcgcctcgtgtcctatgaggga
cgcctgttccgcctcggcgacagccacggcgtgagccgcgaggacttcctgaagaactat
gtcggctccgagctcgacccgcgctggctcaaccgcgtctcgaaactctcggccaagggc
tggaagaatttcgtcgcgcacgagaaggacaagatcaaggatctgcgccacgaggtgcag
cagcttgcggcgctgacgggcctcgagatcggcgaattccgcaagatcgtgctcggcgtg
cagaagggcgagcgcgaggcgcggcaggcgaagaaggaaatggtggaggcgaaccttcgc
ctcgtcatctccatcgccaagaaatacaccaaccgcggcctgcagttcctcgatctcatt
caggaaggcaacatcggcctgatgaaggcggtcgacaagttcgagtatcgccgcggctac
aaattctcgacctacgcgacgtggtggatccggcaggcgatcacccgcagcattgcagac
caggcgcgcaccattcgtattccggtgcacatgatagagacgatcaacaagatcgtgcgc
acctcgcgccagatgctgaacgagatcggccgcgagccgacgccggaagagctggccgaa
aagctcggcatgccgctcgagaaggtgcgcaaggttctcaagatcgccaaggagccgctg
tcgctcgagacgccggtgggcgacgaggaagactcacacctcggcgatttcatcgaggac
aagaacgcgatcctgccgatcgacgcggcgatccagtcgaacctgcgcgagaccacgacg
cgcgtgctcgcctcgctcacgccgcgcgaggagcgcgtgctgcgcatgcgcttcggcatc
ggcatgaacaccgaccacacgctcgaagaagtcggccagcagttctcggtgacgcgcgaa
cgcatccgccagatcgaggcgaaggcactgcgcaagctgaagcatccgtcgcggtcgcgg
aagctgcggagctttttggataactga
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