Oceanobacillus iheyensis: OB3041
Help
Entry
OB3041 CDS
T00093
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oih
Oceanobacillus iheyensis
Pathway
oih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OB3041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oih03019
]
OB3041
03400 DNA repair and recombination proteins [BR:
oih03400
]
OB3041
Enzymes [BR:
oih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OB3041
Messenger RNA biogenesis [BR:
oih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OB3041
DNA repair and recombination proteins [BR:
oih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OB3041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Sigma70_r4_2
GerE
LisH
Helicase_Sgs1
HHH
Motif
Other DBs
NCBI-ProteinID:
BAC14997
JAMSTEC:
OB3041
UniProt:
Q8EM20
LinkDB
All DBs
Position
3153025..3155172
Genome browser
AA seq
715 aa
AA seq
DB search
MQEQVQLLEKYFGYQQFRPGQEAAISSTIKHQNTLAIMPTGGGKSICYQIPGLSMNGTSI
IISPLISLMKDQVDALEALGISATYINSSITTQEQNKRLYGMQSGKYDFVYVAPERFESD
FFIQAIKRTYLSLIAFDEAHCISQWGHDFRPSYRSIIPNITRLPHIPVLMALTATATKEV
IRDIQQLLHISDEHTVHTGFERKNLSFHLIKGKNKQDYIRSYLKEHQDESGIIYAATRKQ
VDSIYELLQKAGYSVSKYHAGLSEQERQEEQMSFIHDKTTIMVATNAFGMGIDKSNVRYV
IHYAMPMNIESYYQEAGRAGRDGESSDCILLYSPQDVQLQKFLIEQSDMEEEAQQKEYKK
LQSMTNYCHTHSCLNRYILDYFQSEQDNASHTCDRCSNCTERKEKLNITEEAQMILSCVK
RLEERFGVSITSKVLKGSKDKKIMGFRLQKLSTYGIMAKYTEKQITEQIHFLIAENLLSI
EEGKFPLLKLNKNSVEVLKGTRKVTMFSSPIPTSETVDYNTSLFELLRSKRKELAQELEL
PPYVLFSDTSLKDMARYFPDTKEDMLAIKGVGEKKWDQYGEGFLEIITDWKEKNPTIKQP
IPINRTKRTEQISKDDRPSHIISHQLFYSGKTIPEIASIRELSEMTVETHLFKAGKEGHP
LSWSFFLSDKEEQLILSTYEKIGESKLKPIREALPEELSYTKIKAALVKNDLFQV
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaacaagtgcaactattagaaaaatatttcggctatcaacaatttcgccctggt
caagaagcagcaatttcctccacgataaagcatcaaaacactttagcaatcatgccaacc
ggtggtgggaaatcaatatgttatcaaataccaggattatcaatgaatggtacttccatc
atcatatctccacttatctccctaatgaaagatcaagtggatgctttagaagctctagga
atttctgcaacttacatcaatagttcgataaccacccaagaacaaaacaaacgcctatac
ggtatgcagtcaggcaaatatgattttgtttatgttgctccggaaagatttgaatctgac
ttttttatacaagcaattaaacgaacgtatctttcattaattgcatttgatgaagcacat
tgtatatcccaatggggacatgattttagacctagttatcgttccattattccaaatatc
acacgtttgccacatatacctgtgttgatggcattaactgctacggcaacaaaggaagtt
attcgtgatatccaacagcttttgcatatatccgatgaacatactgtacatacaggattc
gaacgaaaaaatctatccttccatctaattaaaggaaaaaataaacaagattatattcgt
tcctatttgaaagaacaccaggatgaatccggaattatatatgcggctacccgcaaacaa
gtagatagtatctatgaattattacaaaaagcaggttatagtgtatccaagtaccatgct
ggattatccgaacaagaacgacaagaagaacagatgtcatttattcatgataagactacg
ataatggttgcgacaaatgcatttggtatgggtatcgataaatctaatgtacgttatgtc
atccactacgctatgccaatgaacatagaatcttattaccaagaagctggtagggctggt
agagatggagaatcaagtgattgtattttgctttattctccacaggatgtacaattacaa
aaatttttaatagaacaatccgatatggaagaagaagcacaacaaaaggaatataagaag
ctacagtccatgacgaattattgtcatacacatagttgcttaaaccggtatattttagat
tatttccagtctgagcaagataatgcatcacatacttgtgatcgttgtagtaattgtacg
gagaggaaagaaaaactcaatataacagaagaagcacagatgattctttcgtgtgtaaaa
cggttagaagaacgattcggagttagtatcacttcgaaagtattgaaaggatctaaagac
aaaaaaatcatgggatttcggcttcaaaaacttagtacttatggaattatggctaaatat
acagaaaaacaaataacggaacaaattcactttttaatcgcggagaaccttttatccata
gaggaagggaaattccctttattaaaactaaacaaaaactctgttgaggtgctgaaagga
acacgtaaggttaccatgttctccagtcccatccctactagtgaaactgtcgattataac
acatcattatttgagctattacgtagtaaacggaaggaacttgcccaagaactcgaacta
ccaccatatgtattattctccgatacctctttaaaagatatggcaagatattttcctgat
actaaagaagacatgttagctataaaaggggttggagagaaaaagtgggatcaatatggt
gagggtttcttagaaattattactgactggaaagaaaagaatcctactataaagcaacca
attcctattaaccgtacgaagagaactgaacaaatatcaaaagatgatcgcccatctcat
attatcagccaccaattattttacagtggtaaaacgattcctgaaattgcatctattcgt
gaactatcagaaatgacggtagagacacatttatttaaagcaggtaaagaaggtcatccc
ttatcatggagttttttcctttctgataaggaagagcaactcatactttcaacgtatgag
aaaataggagaatctaagttaaaacctattagagaggcactacctgaagaattgagttat
acgaaaatcaaagctgcactcgttaaaaatgacttgtttcaagtgtga
DBGET
integrated database retrieval system
