KEGG   Oryzias latipes (Japanese medaka): 101162214
Entry
101162214         CDS       T02443                                 
Name
(RefSeq) collagen alpha-1(XI) chain isoform X2
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
ola  Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:ola00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ola00536]
    101162214
Glycosaminoglycan binding proteins [BR:ola00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   101162214
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 TAF1D
Other DBs
NCBI-GeneID: 101162214
NCBI-ProteinID: XP_011476360
LinkDB
Position
8:complement(8598709..8641616)
AA seq 1862 aa
MDHQTRTTSCWTILFLFILRPLATSQTADPIDVLRALELSENMEGVSLEAGLCTSRRGTD
ETDMAYKIKKIQLSAPTKQLFPDSRFPENFSLMTTVRAKKDSQVFVLSVYNDEGVQQLGL
EVGRSPVFLYEDQHGQPSPDLYPIFKRISLADGKWHRIAYSVLDKTVTLHLDCERVESVE
LLRGDGAVVSTDGVTVFGTRLLDEEVFEGDIQQLLIVEDPHAAANYCANYMPDCDSALPT
ISQVSKQENVQLEPDALMQSDQPAELKEVSERDRKGKKHKKKRGKGSKGKRKGKGKGKKG
SRKRKHKEEESEGSLLRLSEFQSQQAFQPTQLPETKTTEINFPTEAFDQTITGVSTNKPD
FTTQAPTVVFSTVPVTKVTEEENRLLKEPVVEYGDDLYKDLYDDLSVSTVTVRPNGTEYE
MLEYEDFRNDTELEYEEYEIIEDDFNFAERERAETLNVERALRAEKGQKGEPAVIEPGTL
MVGPPGLLGPDGLPGPAGPVGPPGPRGDPGDMGPPGRPGLAGVDGIPGPPGTLLMIPFKY
SAGDSQNGPVMSPQEAQAQAILQQSRLSLKGPPGPLGLTGRPGPLGVPGTSGLKGDRGND
GPPGPRGLPGTPGIHGKPGKRGHAGVDGGRGAPGEAGSKGDRGFDGLPGLPGDKGHRGGS
GKPGPAGPAGEPGEKGPQGPLGPRGQPGEPGPRGLVGPKGPLGPPGQPGIRGIDGVQGSK
GNLGPPGEIGPPGQQGSPGVQGFPGAQGPIGLPGEKGPQGKPGILGLPGIDGPPGHPGRE
GPPGEKGLQGLPGSQGPIGYPGTRGVKGADGVRGMKGSKGEKGEDGFPGIKGDMGIKGDR
GDNGAPGPRGEDGPEGPKGQTGSLGDPGAPGIAGEKGKLGVPGLPGYPGRQGAKGSLGFL
GAPGVLGEKGRRGPAGQPGSGGQRGPNGARGGRGARGPTGKPGEKGSAGQDGPPGSPGEQ
GPQGPQGRNGETGPKGPNGPPGKDGLPGHPGQRGEPGFQGKNGPPGPPGVVGPQGKSGEI
GPTGDRGHPGSPGPPGEQGLPGTAGKEGAKGDPGPLGASGKSGPPGLKGFRGTRGTPGAV
GPAGLKGGEGLPGVAGAAGATGERGPAGPAGAIGQPGRPGSVGPAGPMGEKGEPGEKGTT
GLAGRDGEPGPAGLPGIAGPQGPPGEDGDKGETGGPGQKGSKGDKGEAGPSGPAGIQGPV
GPPGPSGADGEPGPRGQQGLNGPKGDEGPRGFKGASGPSGLQGMPGPPGEKGESGHVGSM
GPPGLHGPRGPQGPIGGEGQSGLPGGVGQPGLVGEKGEDGEAGDPGPVGEPGIPGAKGNV
GEKGDAGAPGAAGPPGPRGVPGEDGPKGNLGPIGFPGDLGPPGEPGVNGADGAPGPKGDN
GEPGKAGPTGASGEPGPPGPPGRRGHVGAAGKEGKQGMKGAKGATGNLGPMGKPGPVGPQ
GQPGRPGPEGLRGIPGPAGEHGLNGPPGQIGPPGPIGPPGLPGFKGDPGRVGDKGHGGLI
GLIGPPGEPGEKGDRGLPGIQGLQGPKGDEGMAGSHGPTGPPGLPGFSGAAGEKGSKGEP
GVIGSIGDPGPAGPPGPPGLPATMIEPLPFREGRRKRRRQARRAASAKENNVDLHKEGPL
QREQPLEDAEGMEEVFATLSSMKNEVELMRRPIGTFESPARTCKELLMVQPNFKDGDYWI
DPNQGCHKDSLRVFCNFTAGGETCLYPDKRTETVKLASWNKEKPGSWYSQYRRGKQFSYS
DRDGNPVHVVQLTFLKLLSATAKQTFTYNCQNSAGWFDSTSSSYQHALRLRASNDEELTQ
AKSPFITVVHDGCQFRRSQERTVLEIAAPSAELLPIIDVAPEDFGKNSQKFGFQVGHVCF
NG
NT seq 5589 nt   +upstreamnt  +downstreamnt
atggaccaccaaacaaggaccacgtcttgctggacaatactttttctgttcatcctacgt
cccttagcgacgagtcaaactgctgatcccattgatgttctgcgagcgctggagctttca
gagaacatggagggggtgtccttggaggccggtctctgcaccagcaggaggggcaccgat
gagacggacatggcttacaagatcaaaaagatccagctcagcgcacccactaaacagcta
ttccctgattccagatttcctgagaatttctctctgatgacgactgttcgagctaaaaaa
gactcccaagtctttgtgctttcggtgtacaacgacgaaggggtgcagcagctggggctg
gaagtgggacgatcgcctgtgttcttgtatgaagaccagcatgggcagccaagtccagat
ttataccccatcttcaagaggatcagcctggctgatggaaaatggcacaggatagcctac
agtgtgttggacaagactgtgacccttcaccttgattgtgaaagggtagagtcggtggag
ctgctgcgaggggatggcgctgtcgtcagcacagatggagtgactgtgtttggaacgcgg
ctgctggatgaagaggtttttgagggagacattcagcaacttctcattgtggaggacccc
catgctgctgccaactactgtgcaaactatatgccagactgtgactctgctctgccaacc
atcagccaagtttcaaaacaggagaatgtccagcttgagcctgatgccttgatgcaaagt
gaccagccagctgaactcaaggaggtgtctgaaagggacaggaagggcaaaaagcacaaa
aagaaaaggggcaagggctccaaaggcaaacgcaaaggcaagggcaaaggcaagaagggg
tccagaaagagaaaacacaaagaggaggaatctgaaggaagcctcctcagattgtcggag
tttcagtctcaacaagcttttcagcccacacagctgccagaaactaagaccactgagatc
aactttcccactgaagcatttgaccagaccatcactggggtgtccacaaacaagcctgat
ttcacaactcaggcccccactgtggtgttcagcactgtgcctgtcacaaaggttactgag
gaggaaaacagactgctaaaggagccggtggtagagtatggggatgacctttacaaagac
ctgtatgacgatctctcagtttccacagtaaccgtgcgcccaaatgggactgagtatgag
atgcttgaatatgaagatttcagaaatgacacagagttagagtatgaagagtatgaaatt
atcgaggatgactttaactttgcagaacgtgaaagagccgagactctgaatgtagagaga
gctctcagagcagagaaagggcaaaaaggagaaccagctgttattgaaccgggaaccctg
atggtgggacccccgggccttctgggtccagatggtctgcctggcccagctggaccagta
ggccctccaggacccagaggagatccaggtgatatgggtcctccaggacgccctggcctt
gcgggagttgatgggatcccaggtcctccagggaccttgttaatgataccttttaagtat
tcagcaggggattcacagaacggaccagtgatgtctccccaagaagcacaagcacaagct
attctgcagcagagcaggctgtcacttaagggacctccaggtccactgggtcttacaggg
cgacctggcccattgggtgttccaggaacatcagggctcaaaggtgatagaggaaacgac
ggtccccctggacctcgtgggttgccaggcacccctggaattcatggaaagccagggaag
aggggccatgcaggtgtggatgggggccgcggagctcccggggaagctggctctaaaggt
gacaggggatttgatggtctgcccggtctcccaggagacaagggacacagagggggcagc
ggaaagcctggtcctgcagggcctgctggagagccaggagagaaaggacctcaaggacct
ctgggcccaagagggcaaccaggggaacctggccctagaggtcttgttgggccaaagggt
cccctcggcccacctgggcaaccgggaatacgaggaatcgatggagtgcaagggtcaaag
ggcaacctgggtccacctggagaaattgggcctccgggtcaacaaggcagtcctggagtg
cagggctttcctggtgctcagggtccaatcggattgccaggagaaaagggtccacagggg
aaaccaggtatactgggactgccaggcattgatggccctcctggccacccaggaagagag
ggccccccaggagaaaaaggtttacaaggtttaccaggctcacagggccctatcgggtac
ccaggcactcgtggagtcaagggagcagacggagtcaggggtatgaaaggtagtaaagga
gaaaagggagaagatggtttcccagggataaagggtgacatgggcatcaaaggagacagg
ggcgacaatggagctccaggtccacgtggagaagatggacctgagggtccaaagggtcaa
acaggatctttgggagatccaggagctccaggaatagctggagagaagggtaaacttgga
gttcctggattgccaggatatccaggaagacaaggcgctaagggatcactgggtttcctg
ggggcacccggggtcctaggagaaaaggggcgaaggggtccagctggtcagccaggttct
gggggccaaagaggtcctaatggagctcggggaggaagaggtgcaagggggccgactgga
aagcctggtgaaaagggatcagctggccaagatggtcctccaggatctcctggagaacag
ggtcctcaaggaccacagggaagaaatggtgaaacaggacccaaagggccaaatggaccc
ccaggaaaagatggattgccgggccatccaggtcaaagaggagaaccgggctttcaaggc
aaaaacggaccaccaggccccccaggagttgttggaccacaaggaaaatctggtgagata
gggccaactggagacagagggcatccaggttcaccaggaccaccaggtgagcaaggttta
ccaggaactgctggaaaggagggtgccaagggggatccaggacccctaggagcctcagga
aaaagtggccctccgggactcaaaggcttcagagggaccagagggacccctggagcagtg
ggtcctgcaggtctgaagggaggggagggtctgcctggtgttgcaggagctgctggggcc
acaggagaaagaggccctgctggtcctgctggcgctattggccagccaggacggcctggc
agcgtgggtcctgctgggccgatgggagagaaaggcgagccaggagagaaaggaacaaca
gggctggctggacgtgatggggagccaggacctgcaggactgccagggattgcagggcct
caagggcctcctggcgaggatggagacaagggagagacaggaggacctggccaaaagggt
agcaaaggagacaaaggagaagctgggccttctggacctgctggcattcaaggacctgtg
ggtccaccgggcccatccggtgcagatggagagccaggtcctcgagggcaacagggtctg
aatggaccaaagggagatgaaggaccacggggctttaagggggcatccggtccctcagga
ctgcagggaatgccaggaccaccaggggagaaaggagaaagtggacatgttggctcaatg
ggacctccaggactgcacggtccacgaggcccccagggacccattggtggagagggccaa
tctggattgccgggaggagttggtcaacctggacttgttggagagaagggcgaagacgga
gaagcaggagaccctgggccagtcggagagcctgggattcctggtgccaaaggcaatgtg
ggcgagaaaggggatgctggggcccccggtgccgctgggcctcctggacccagaggagta
ccaggggaagatggtcccaaaggcaaccttgggcctattggatttcctggagatttgggt
ccacctggagaaccaggtgtaaatggagctgatggtgcacctggtccaaaaggagacaat
ggagaaccaggcaaagcgggacccacaggagcttcaggtgaacctggtccacctggacct
cctggtcggagaggtcatgttggagctgcaggaaaagaggggaagcagggcatgaaagga
gccaaaggtgcaacaggaaatctgggtccaatgggaaaaccgggaccagtaggaccccaa
ggtcagccagggagacctggtccagaaggactcagaggcatccctggtcctgcgggtgaa
catgggttgaatggcccaccaggacaaattggaccacctggaccaataggaccaccggga
cttccaggatttaaaggagatcctggacgtgtaggagacaaaggccatggaggattgatt
ggcctaattgggcccccaggtgaacctggtgaaaaaggagacagaggccttccaggaatc
cagggcttacaaggacctaaaggagatgagggtatggctggatcacatggtcctactggc
ccaccaggactacctggattctctggtgcagctggagagaaaggatcaaaaggagagcca
ggtgtcataggttccataggagatccaggccctgctggaccccctggacctccagggctt
cctgcaactatgattgagccacttccgtttagggagggtaggcgaaagagacgaaggcag
gcaagaagagcagcatcagccaaagaaaacaatgtggatttgcacaaagaagggccactg
cagagagaacagcctctggaagacgctgaaggaatggaggaagtctttgccaccttgtct
tctatgaagaatgaagtggagttgatgagaaggcctattggaacctttgagagtcctgcc
cggacatgcaaagagcttctgatggtccagcctaatttcaaagatggagactactggata
gatcctaaccagggctgtcacaaagactccctcagggttttttgtaacttcacagcaggg
ggagagacctgtctttatcctgacaaaaggactgaaacggtgaaactagcatcatggaat
aaagagaaacctgggagctggtacagccaatacagaagaggcaagcagttttcctacagt
gacagagatggaaaccctgtgcatgtagttcagctgaccttcttgaagctactaagtgct
acagccaagcagactttcacctataactgtcagaactcagcgggctggtttgacagcacc
tccagctcctaccagcatgccctccgcttgagagccagcaatgatgaggagctgacacag
gccaaaagcccctttatcacagtggtacacgacggatgccagttccgcaggagtcaggaa
agaaccgttttggagatcgctgctccctcagcggagttgctccctataatagatgtggct
ccagaggactttggcaagaacagccaaaagtttggattccaggttggacatgtatgcttc
aacggttaa

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