Oryzias latipes (Japanese medaka): 101162214
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Entry
101162214 CDS
T02443
Name
(RefSeq) collagen alpha-1(XI) chain isoform X2
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ola00536
]
101162214
Glycosaminoglycan binding proteins [BR:
ola00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101162214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
TAF1D
Motif
Other DBs
NCBI-GeneID:
101162214
NCBI-ProteinID:
XP_011476360
LinkDB
All DBs
Position
8:complement(8598709..8641616)
Genome browser
AA seq
1862 aa
AA seq
DB search
MDHQTRTTSCWTILFLFILRPLATSQTADPIDVLRALELSENMEGVSLEAGLCTSRRGTD
ETDMAYKIKKIQLSAPTKQLFPDSRFPENFSLMTTVRAKKDSQVFVLSVYNDEGVQQLGL
EVGRSPVFLYEDQHGQPSPDLYPIFKRISLADGKWHRIAYSVLDKTVTLHLDCERVESVE
LLRGDGAVVSTDGVTVFGTRLLDEEVFEGDIQQLLIVEDPHAAANYCANYMPDCDSALPT
ISQVSKQENVQLEPDALMQSDQPAELKEVSERDRKGKKHKKKRGKGSKGKRKGKGKGKKG
SRKRKHKEEESEGSLLRLSEFQSQQAFQPTQLPETKTTEINFPTEAFDQTITGVSTNKPD
FTTQAPTVVFSTVPVTKVTEEENRLLKEPVVEYGDDLYKDLYDDLSVSTVTVRPNGTEYE
MLEYEDFRNDTELEYEEYEIIEDDFNFAERERAETLNVERALRAEKGQKGEPAVIEPGTL
MVGPPGLLGPDGLPGPAGPVGPPGPRGDPGDMGPPGRPGLAGVDGIPGPPGTLLMIPFKY
SAGDSQNGPVMSPQEAQAQAILQQSRLSLKGPPGPLGLTGRPGPLGVPGTSGLKGDRGND
GPPGPRGLPGTPGIHGKPGKRGHAGVDGGRGAPGEAGSKGDRGFDGLPGLPGDKGHRGGS
GKPGPAGPAGEPGEKGPQGPLGPRGQPGEPGPRGLVGPKGPLGPPGQPGIRGIDGVQGSK
GNLGPPGEIGPPGQQGSPGVQGFPGAQGPIGLPGEKGPQGKPGILGLPGIDGPPGHPGRE
GPPGEKGLQGLPGSQGPIGYPGTRGVKGADGVRGMKGSKGEKGEDGFPGIKGDMGIKGDR
GDNGAPGPRGEDGPEGPKGQTGSLGDPGAPGIAGEKGKLGVPGLPGYPGRQGAKGSLGFL
GAPGVLGEKGRRGPAGQPGSGGQRGPNGARGGRGARGPTGKPGEKGSAGQDGPPGSPGEQ
GPQGPQGRNGETGPKGPNGPPGKDGLPGHPGQRGEPGFQGKNGPPGPPGVVGPQGKSGEI
GPTGDRGHPGSPGPPGEQGLPGTAGKEGAKGDPGPLGASGKSGPPGLKGFRGTRGTPGAV
GPAGLKGGEGLPGVAGAAGATGERGPAGPAGAIGQPGRPGSVGPAGPMGEKGEPGEKGTT
GLAGRDGEPGPAGLPGIAGPQGPPGEDGDKGETGGPGQKGSKGDKGEAGPSGPAGIQGPV
GPPGPSGADGEPGPRGQQGLNGPKGDEGPRGFKGASGPSGLQGMPGPPGEKGESGHVGSM
GPPGLHGPRGPQGPIGGEGQSGLPGGVGQPGLVGEKGEDGEAGDPGPVGEPGIPGAKGNV
GEKGDAGAPGAAGPPGPRGVPGEDGPKGNLGPIGFPGDLGPPGEPGVNGADGAPGPKGDN
GEPGKAGPTGASGEPGPPGPPGRRGHVGAAGKEGKQGMKGAKGATGNLGPMGKPGPVGPQ
GQPGRPGPEGLRGIPGPAGEHGLNGPPGQIGPPGPIGPPGLPGFKGDPGRVGDKGHGGLI
GLIGPPGEPGEKGDRGLPGIQGLQGPKGDEGMAGSHGPTGPPGLPGFSGAAGEKGSKGEP
GVIGSIGDPGPAGPPGPPGLPATMIEPLPFREGRRKRRRQARRAASAKENNVDLHKEGPL
QREQPLEDAEGMEEVFATLSSMKNEVELMRRPIGTFESPARTCKELLMVQPNFKDGDYWI
DPNQGCHKDSLRVFCNFTAGGETCLYPDKRTETVKLASWNKEKPGSWYSQYRRGKQFSYS
DRDGNPVHVVQLTFLKLLSATAKQTFTYNCQNSAGWFDSTSSSYQHALRLRASNDEELTQ
AKSPFITVVHDGCQFRRSQERTVLEIAAPSAELLPIIDVAPEDFGKNSQKFGFQVGHVCF
NG
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atggaccaccaaacaaggaccacgtcttgctggacaatactttttctgttcatcctacgt
cccttagcgacgagtcaaactgctgatcccattgatgttctgcgagcgctggagctttca
gagaacatggagggggtgtccttggaggccggtctctgcaccagcaggaggggcaccgat
gagacggacatggcttacaagatcaaaaagatccagctcagcgcacccactaaacagcta
ttccctgattccagatttcctgagaatttctctctgatgacgactgttcgagctaaaaaa
gactcccaagtctttgtgctttcggtgtacaacgacgaaggggtgcagcagctggggctg
gaagtgggacgatcgcctgtgttcttgtatgaagaccagcatgggcagccaagtccagat
ttataccccatcttcaagaggatcagcctggctgatggaaaatggcacaggatagcctac
agtgtgttggacaagactgtgacccttcaccttgattgtgaaagggtagagtcggtggag
ctgctgcgaggggatggcgctgtcgtcagcacagatggagtgactgtgtttggaacgcgg
ctgctggatgaagaggtttttgagggagacattcagcaacttctcattgtggaggacccc
catgctgctgccaactactgtgcaaactatatgccagactgtgactctgctctgccaacc
atcagccaagtttcaaaacaggagaatgtccagcttgagcctgatgccttgatgcaaagt
gaccagccagctgaactcaaggaggtgtctgaaagggacaggaagggcaaaaagcacaaa
aagaaaaggggcaagggctccaaaggcaaacgcaaaggcaagggcaaaggcaagaagggg
tccagaaagagaaaacacaaagaggaggaatctgaaggaagcctcctcagattgtcggag
tttcagtctcaacaagcttttcagcccacacagctgccagaaactaagaccactgagatc
aactttcccactgaagcatttgaccagaccatcactggggtgtccacaaacaagcctgat
ttcacaactcaggcccccactgtggtgttcagcactgtgcctgtcacaaaggttactgag
gaggaaaacagactgctaaaggagccggtggtagagtatggggatgacctttacaaagac
ctgtatgacgatctctcagtttccacagtaaccgtgcgcccaaatgggactgagtatgag
atgcttgaatatgaagatttcagaaatgacacagagttagagtatgaagagtatgaaatt
atcgaggatgactttaactttgcagaacgtgaaagagccgagactctgaatgtagagaga
gctctcagagcagagaaagggcaaaaaggagaaccagctgttattgaaccgggaaccctg
atggtgggacccccgggccttctgggtccagatggtctgcctggcccagctggaccagta
ggccctccaggacccagaggagatccaggtgatatgggtcctccaggacgccctggcctt
gcgggagttgatgggatcccaggtcctccagggaccttgttaatgataccttttaagtat
tcagcaggggattcacagaacggaccagtgatgtctccccaagaagcacaagcacaagct
attctgcagcagagcaggctgtcacttaagggacctccaggtccactgggtcttacaggg
cgacctggcccattgggtgttccaggaacatcagggctcaaaggtgatagaggaaacgac
ggtccccctggacctcgtgggttgccaggcacccctggaattcatggaaagccagggaag
aggggccatgcaggtgtggatgggggccgcggagctcccggggaagctggctctaaaggt
gacaggggatttgatggtctgcccggtctcccaggagacaagggacacagagggggcagc
ggaaagcctggtcctgcagggcctgctggagagccaggagagaaaggacctcaaggacct
ctgggcccaagagggcaaccaggggaacctggccctagaggtcttgttgggccaaagggt
cccctcggcccacctgggcaaccgggaatacgaggaatcgatggagtgcaagggtcaaag
ggcaacctgggtccacctggagaaattgggcctccgggtcaacaaggcagtcctggagtg
cagggctttcctggtgctcagggtccaatcggattgccaggagaaaagggtccacagggg
aaaccaggtatactgggactgccaggcattgatggccctcctggccacccaggaagagag
ggccccccaggagaaaaaggtttacaaggtttaccaggctcacagggccctatcgggtac
ccaggcactcgtggagtcaagggagcagacggagtcaggggtatgaaaggtagtaaagga
gaaaagggagaagatggtttcccagggataaagggtgacatgggcatcaaaggagacagg
ggcgacaatggagctccaggtccacgtggagaagatggacctgagggtccaaagggtcaa
acaggatctttgggagatccaggagctccaggaatagctggagagaagggtaaacttgga
gttcctggattgccaggatatccaggaagacaaggcgctaagggatcactgggtttcctg
ggggcacccggggtcctaggagaaaaggggcgaaggggtccagctggtcagccaggttct
gggggccaaagaggtcctaatggagctcggggaggaagaggtgcaagggggccgactgga
aagcctggtgaaaagggatcagctggccaagatggtcctccaggatctcctggagaacag
ggtcctcaaggaccacagggaagaaatggtgaaacaggacccaaagggccaaatggaccc
ccaggaaaagatggattgccgggccatccaggtcaaagaggagaaccgggctttcaaggc
aaaaacggaccaccaggccccccaggagttgttggaccacaaggaaaatctggtgagata
gggccaactggagacagagggcatccaggttcaccaggaccaccaggtgagcaaggttta
ccaggaactgctggaaaggagggtgccaagggggatccaggacccctaggagcctcagga
aaaagtggccctccgggactcaaaggcttcagagggaccagagggacccctggagcagtg
ggtcctgcaggtctgaagggaggggagggtctgcctggtgttgcaggagctgctggggcc
acaggagaaagaggccctgctggtcctgctggcgctattggccagccaggacggcctggc
agcgtgggtcctgctgggccgatgggagagaaaggcgagccaggagagaaaggaacaaca
gggctggctggacgtgatggggagccaggacctgcaggactgccagggattgcagggcct
caagggcctcctggcgaggatggagacaagggagagacaggaggacctggccaaaagggt
agcaaaggagacaaaggagaagctgggccttctggacctgctggcattcaaggacctgtg
ggtccaccgggcccatccggtgcagatggagagccaggtcctcgagggcaacagggtctg
aatggaccaaagggagatgaaggaccacggggctttaagggggcatccggtccctcagga
ctgcagggaatgccaggaccaccaggggagaaaggagaaagtggacatgttggctcaatg
ggacctccaggactgcacggtccacgaggcccccagggacccattggtggagagggccaa
tctggattgccgggaggagttggtcaacctggacttgttggagagaagggcgaagacgga
gaagcaggagaccctgggccagtcggagagcctgggattcctggtgccaaaggcaatgtg
ggcgagaaaggggatgctggggcccccggtgccgctgggcctcctggacccagaggagta
ccaggggaagatggtcccaaaggcaaccttgggcctattggatttcctggagatttgggt
ccacctggagaaccaggtgtaaatggagctgatggtgcacctggtccaaaaggagacaat
ggagaaccaggcaaagcgggacccacaggagcttcaggtgaacctggtccacctggacct
cctggtcggagaggtcatgttggagctgcaggaaaagaggggaagcagggcatgaaagga
gccaaaggtgcaacaggaaatctgggtccaatgggaaaaccgggaccagtaggaccccaa
ggtcagccagggagacctggtccagaaggactcagaggcatccctggtcctgcgggtgaa
catgggttgaatggcccaccaggacaaattggaccacctggaccaataggaccaccggga
cttccaggatttaaaggagatcctggacgtgtaggagacaaaggccatggaggattgatt
ggcctaattgggcccccaggtgaacctggtgaaaaaggagacagaggccttccaggaatc
cagggcttacaaggacctaaaggagatgagggtatggctggatcacatggtcctactggc
ccaccaggactacctggattctctggtgcagctggagagaaaggatcaaaaggagagcca
ggtgtcataggttccataggagatccaggccctgctggaccccctggacctccagggctt
cctgcaactatgattgagccacttccgtttagggagggtaggcgaaagagacgaaggcag
gcaagaagagcagcatcagccaaagaaaacaatgtggatttgcacaaagaagggccactg
cagagagaacagcctctggaagacgctgaaggaatggaggaagtctttgccaccttgtct
tctatgaagaatgaagtggagttgatgagaaggcctattggaacctttgagagtcctgcc
cggacatgcaaagagcttctgatggtccagcctaatttcaaagatggagactactggata
gatcctaaccagggctgtcacaaagactccctcagggttttttgtaacttcacagcaggg
ggagagacctgtctttatcctgacaaaaggactgaaacggtgaaactagcatcatggaat
aaagagaaacctgggagctggtacagccaatacagaagaggcaagcagttttcctacagt
gacagagatggaaaccctgtgcatgtagttcagctgaccttcttgaagctactaagtgct
acagccaagcagactttcacctataactgtcagaactcagcgggctggtttgacagcacc
tccagctcctaccagcatgccctccgcttgagagccagcaatgatgaggagctgacacag
gccaaaagcccctttatcacagtggtacacgacggatgccagttccgcaggagtcaggaa
agaaccgttttggagatcgctgctccctcagcggagttgctccctataatagatgtggct
ccagaggactttggcaagaacagccaaaagtttggattccaggttggacatgtatgcttc
aacggttaa
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