Oryzias latipes (Japanese medaka): 101163762
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Entry
101163762 CDS
T02443
Symbol
pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03015
mRNA surveillance pathway
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101163762 (pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
101163762 (pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101163762 (pabpc1)
03041 Spliceosome [BR:
ola03041
]
101163762 (pabpc1)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101163762 (pabpc1)
mRNA cycle factors
Stress granule specific factors
101163762 (pabpc1)
Spliceosome [BR:
ola03041
]
Complex C
Other components
Complex C specific factors
101163762 (pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
RRM_5
RRM_3
Motif
Other DBs
NCBI-GeneID:
101163762
NCBI-ProteinID:
XP_011483184
UniProt:
A0A3B3HJ84
A0A3P9JCV9
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All DBs
Position
16:5906181..5911190
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AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFER
HEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPSPRWATQGVRPQHFQNIQNAMRPSAPRPQTFNAIRASTATNTQVPRM
MASQRMPTQALSQRPAAASATTAPVRAMPQYKYAPGVRNPQQHMASQQQVPMPQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctagcgcacctagctacccaatggcctccctctacgtcggggatctgcaccca
gacgtgaccgaggccatgctgtacgagaaattcagcccggccggacccatcctctccatc
agagtgtgtagggacatgatcacccgccgttctcttggctatgcctacgtgaacttccag
cagcccgctgacgctgagcgagccctggataccatgaactttgatgtcatcaagggaagg
cctcttcgcatcatgtggtcccaacgtgacccatccctgaggaaaagtggagtgggaaac
atcttcatcaagaacctggacaaatccattgataacaaagccctttacgacacattttca
gcttttggaaacatcctgtcttgcaaggtggtttgcgatgaaaatggctcaaagggttac
ggctttgtgcattttgagacccatgaggctgctgagcgtgccattgagaaaatgaatggc
atgttgctcaatgacagaaaagtatttgtgggccgtttcaagtcacgcaaagagagggaa
gcagagcttggggcgcgtgctcgagagtttaccaatgtttacatcaagaactttggagag
gacatggatgatgagaagctgaaggagctgtttggcaattatgggcccgcgctcagcgtc
agggtgatgactgatgataccggcaaatcaaagggatttggttttgtcagctttgaaaga
catgaggatgcacagaaggctgttgatgacatgaatggtaaagaactgaatggaaggcag
gtttatgttggccgtgcacagaagaaaggagagcgtcagaatgagctgaagcgcaaattt
gagcagatgaaacaggatcgcatgaccagatatcagggtgtcaatctgtacgttaagaac
ttggatgatggtcttgatgatgagcgtctgcgcaaagaattctctccatttggaaccata
acaagtgcaaaggtcatgatggaaggtggtcgcagtaaaggctttggctttgtgtgcttc
tcctcacctgaagaagccactaaagctgtaactgagatgaacggccggattgtggctaca
aagccgctgtacgtggctctggctcaacggaaggaggagcgtcaagctcacctcaccaac
cagtatatgcagaggatggctactgtccgggctgtgcccaacccggtcctcaacccctac
cagcctgctccgccttccgggtatttcatggctgccatccctcaggcccagaaccgtgca
gcgtattactctgccaaccagctggctcagcttcgtcccagcccacgctgggccacacag
ggagtgcgtcctcagcatttccaaaacatacagaatgccatgcgtccatcagcacctcga
ccccagacctttaacgccatccgtgcgagtaccgccaccaacacccaggtcccgcgcatg
atggcatctcagcgtatgcccacccaggcgctcagccagcgccctgctgctgcttcagcc
acaaccgccccagtccgtgccatgccccaatacaaatatgctcctggggtgcgtaacccc
cagcaacatatggcctctcagcaacaggtccccatgccacagcctgcagtccatgtccaa
ggccaggagcccctgacggcctctatgctggctgctgctcccccccaagaacaaaagcag
atgctgggtgagcgcctgttccccctgattcagaacatgcaccccagcctggcaggcaag
atcaccggtatgcttctggagatcgacaactctgagctgctccacatgctggagtctcca
gagtccctgcgctccaaggtggatgaggctgttgctgtgcttcaagcccaccaggctaaa
gaggccgctcagaagtccaccactcctgctggtgttcccagcgtctaa
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