Oryzias latipes (Japanese medaka): 101169394
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Entry
101169394 CDS
T02443
Symbol
jmjd1c
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C isoform X1
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ola03036
]
101169394 (jmjd1c)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
101169394 (jmjd1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JmjC
C1_2
Motif
Other DBs
NCBI-GeneID:
101169394
NCBI-ProteinID:
XP_023805381
LinkDB
All DBs
Position
19:complement(23176599..23275001)
Genome browser
AA seq
2767 aa
AA seq
DB search
MAVEARPELVGKRFLCVGGDEPPELGTIARWPWRSGVIRAVNHRDGDPVDLTVYVEFDDQ
EWEKREWVKVYEDFQLFLLEHQLVWAKRKEGAAGGAGAGGLLPGTKAKHIQWPALAFKPV
VGKNLLSSVTAVEFLLDRKLDFLSEHSACQPYQDEVDSQNPLFRDNPQLHEEVKSWLKDQ
KVQEIFMQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFSRNMVVMNDQVLEPQNVDPS
MVQMTFLDDVVHSLLKGENIGITSRRRSRSSQNSNTAHMAGGRPCGTTGNSQQSHYTRAQ
ANSPRPVMTSSGPNPKSSPQQQSQSQQVQLALNPLHHSPGGSGREQREPRASRSSRRKGS
DSSVPEEDKEAAGRESKAKVKQTMNKRRKGEEDEKKAGLKRLKTEVTSDLSDCSDSENLH
NKRTTDSSCCSSSSSSLSSSSYSSSSSSEVNSENELKMRSSDEVQSTISQVEEEEEKPGM
KGPKMNDSSSLVGHLSPWADMEAAEKLKKSVLKESVKMMTKEEEELVAVTQITQSPLQPS
QLMVDMSQGGPLESIKNAVKAPGAAVIDITDDAQATVHRESSEAVSALLASQKAESTALS
PYLPLNPSPVSSPPVPPASSPSEGCRRTDVESHAKQHGFMGGGVPSAKSNKIEFGSSEVI
RSVSSMSDSLPLTEKSVPPHPQQQHEQRQYTSTPPSTAPPFSNEAKKLPPHKTNTSAPTD
FVRSKTSPGPNPSSSHFESLKQKSPSTPQNQHHPDLADLKVKPSPGPLDVSKPRPNTSPD
ISKHKITRYSEASPPPARLPTKEEPAEPQRSGFKPVAMRSEAGATGSSTKSPLIIDKNET
FTVYRDPALVQSDAESSSNHVAAYLHPHLHPLHPSSPHSPCLTPASHTHATSHLLAPPHS
SALPHPHLLASGMLPAMPPPATSLLGSHARLESPGSLGHLALAHPAATHQQQFLQGHGRT
PGLSLYPILWQYPNGTPASYPPGLNLPPTPKWVHSETPVSSDSPLRRNTTSPWLHQAASD
SLGLLNHLPVRPASADAHRPPGKMPAHSNPSMTKASLSVQKETLAQLKQDQVDRSRTPAG
KDVLHHRLYLDPHSTSRLGNPQEAGQGADRAVKYKEENRQILKESIEVAPFTSKIQRSMD
PVMDRERTRDPAFPVPVRALTSQSPKASLTHPNIIHQEKSNYFTTLSNSVVNEPPRLYPS
KEMAPYYEKVSAGIVTSVGAVVPSQGLQSLGNYSSKASLSKPPPLIKHQPEGGEGLAGKI
TEQLSQQVTLVQQQHHASVDRMERCSPAISSSSNHHHHQQQQHHQLRTMPSLYRAPVFHP
PTQQALDCKEAVEREKEWERERAGFGGRLSPPTLTPIQPVSLALAGTKTLVEQQKPPTLL
PELRDIKSHRVGAAVTSVAPATSVDVTADGWRGRTVTQGREAVFSRERDASRGKPPAAVA
SVIVGPTSAKYDSLVGANRSGAIIHKEPPSGRFYPSKLEGESARFGESPREPGARRVIQS
NVDDRCQSSFVHGPLSSSSPLNRSAVLVSSAVDLQNKTLKSAFSSRDEVPHLKAGVGGWP
LGQSSADKEGENHVAFDSHAGFSGLSLPQTNSTVASLPSQSPASPSYSVSGSSQPYSSSF
IHLKKHKAALAAAQSRTSLPIAPPSVTTGSPTLSESSDKTPNHTSTPPPSCSQASSSSES
SSSGSAAGRSTPGKSSPVPNGQTMAAAGCGQPINYHKLKKAWLTRHSEEDKNTTATTSST
TTKAEKLLTTTTSSCSATAMSDMIRPCTVNLSASTSSEVDMSKEGGSRLERERQAEEKSG
GEDRKSRRGHKRSYDSGSETAGDDSDGSDSKMEGRAKRQPKPTYKKKQNDMARRRGDADK
DDDDGKPNGIFRSAREKTKLKLASSNGIPRSVLKDWRKVKKLKQTGESFLQDDSCSEIGP
NLQKCRECRVVRSKKGEEPTHSPVFCRFYYFRRLSFSKNGVIRMDGFSAPDQFDDEALAL
WVPSAMEDAHLDKTTAKYILGFIGDKFCQMVVTENTAASWVKKDAKMAWKRAVRGVREMC
DACEATLFNIHWVCQKCGFVVCLDCYKAKERKSSKDKELYVWLKCVKGQPHDHKHLMPTQ
IIPGTALTELVTSMHFLRDKHNIRSCCSCTSKQNALNKLPVTNGVSQVLQNVLNHSNKLA
LVKAEPGSLQNSEHGGIKADTNGSGGGGSSPGSDAGRGASVTPPESQSPLHFLADLAEQK
SREEKKENHQSALLGKALKEDKDGDALEVLQQCKTTSLGAGGAEQGSTLRDLLTTTAGKL
KLGSTDAGIAFAPVYSTASQTGKGGQAMPNILDDIIASVVENKIPASRQSITTKLSIKQD
QITMGNNSCPAAAVTDDAKADRKKPTPPAAPTPEDSVSQHPGIPHSWLSNRRLLWLRDHR
NQNNWKLFRECWRKGQPVLVSGIHKRLNASLWKADSFNQEFADHQGDLLNCKDQVVSNSG
IKEFWDGFEDLTKRPKSKDGEPLVYRLKDWPSGEEFMALMPSRYDDLMKNLPLPEYSDPE
GALNLASHLPSFFVRPDLGPRLCCAYGVAASQEQDFGTANLHLEVSDVVSVLVYVGVAKG
NGVLSKTGVLKRLEEEDLDEGVRKRLKDSSETPGALWHIYLNKDVDRIQEFLHKLSKEQG
SDPSQDQDPVREQAWYLSRKQRQRLLDEHGVHGWTIVQFLGDSVLVPAGAMHQIQNLHSC
VQVINDFVSPEHIVKSFHLTQELRANKEEVNYEDKLQVKNILYHCVKEAVSSLKRSGSDK
DADDQTS
NT seq
8304 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcgaggctcggccggagctggtcgggaagcggttcctctgtgtcggcggggac
gagccgccggaactgggcaccatcgcccggtggccgtggaggtccggggttatacgggct
gtgaaccaccgtgacggcgacccagtcgaccttacggtttatgtggaattcgatgaccag
gagtgggagaagagagagtgggtcaaggtctacgaggatttccagctgtttctgttggag
caccagctggtctgggccaagaggaaggagggagccgcaggaggagcaggagcaggaggc
ctgctgccgggaaccaaggccaagcacatacagtggccggctctggcgtttaagccggtg
gtgggcaagaacctgctgtcttcggtaacggcggtggagttcttgttggatcgtaaactg
gactttctgtctgagcattcagcctgccaaccgtaccaggacgaggtggacagtcagaac
cctctgttcagagacaatccacagctccatgaagaagtgaagagctggctgaaagaccag
aaggtgcaggaaatatttatgcaaggaccctactcactgaatggctaccgagtgcgagtg
tacagacaggattcggccacccagtggttcacgggcatcatcactcaccacgaccttttc
agccgaaacatggttgtcatgaacgaccaggtgctagagccccagaacgtggatccttcg
atggtccagatgaccttcctggatgacgtggtccactctttgctgaaaggagagaacatt
ggcatcacctctaggcgaaggtcgcggtccagccagaacagcaacacggcccatatggct
ggaggccgaccctgcggaaccactggcaactctcagcagagtcattacacacgagctcaa
gcgaacagcccccgcccagtgatgacatcatcgggacccaaccctaaaagctccccccag
cagcaaagtcagtctcagcaagtccagctggcgctcaacccgttgcatcactcgcccggt
gggagcgggcgtgagcagcgagagccgcgcgcctcccgctcctccaggaggaaaggctcg
gacagcagcgtcccagaggaggacaaggaggcggcgggccgagagtccaaggccaaagtg
aagcagacgatgaacaaacgcaggaaaggcgaggaagatgagaagaaggcaggattaaag
aggctgaagacagaagtgacgtccgacctgtcggactgcagcgactcagaaaacctccac
aacaagaggaccacggactcatcctgctgctcttcctcctcctcatccctgtcatcttcg
tcctattcttcctcctcctcctcagaggtcaactctgagaatgaactaaagatgcgcagc
agcgatgaggtacaaagtaccatttcccaagtggaggaggaggaggagaagccagggatg
aagggacctaaaatgaatgactcctcctctctcgttggtcacttatccccgtgggcagac
atggaggctgcagagaagctgaagaagagtgtgctaaaggaatcagtaaaaatgatgaca
aaggaggaggaagagctggtggcagtcacacagatcactcagtctcctcttcagccgtcg
cagctgatggtggacatgagccagggcggacccttggagagcatcaagaacgctgtgaaa
gctccgggcgccgccgtcatcgacatcacggacgacgcccaggccacggtgcacagagag
agctcggaggcggtgtcggcgctgctggcgtcccagaaggccgagtccacggccctctca
ccctacttgcctctcaacccgtctccggtgtcctcgcctcccgtccctccagcctcctcc
ccatcagaggggtgtcgcaggacggacgtggagtcgcacgccaagcagcacggcttcatg
ggaggcggcgtcccttcagccaagagcaacaaaatagagttcggttcgtcggaggtcatc
aggtcggtctcctccatgagcgacagcctgcctctgacggagaagagcgtccctcctcat
cctcagcagcagcacgagcagcggcagtacacgtccaccccccccagcacggccccgcct
ttttccaacgaggcaaaaaagctgcccccacacaaaacaaacacaagtgcccccacagac
tttgtcagatccaaaaccagccccggtcccaaccccagctcctcccactttgagtccttg
aagcagaaatcccccagcaccccccagaaccagcaccaccctgacctggctgaccttaag
gtcaagcccagccccggcccgctggacgtctccaaacccagacccaacacgtcccccgac
atctccaagcataaaataaccaggtactccgaggcctcccccccaccggcacgcttaccc
actaaggaggagccggcagaacctcagcggtccggtttcaagcccgtggcgatgaggtcg
gaggcgggcgccacaggcagcagcaccaagagccccctgatcatcgacaagaacgagacc
ttcacagtttacagggatccagcgctggttcagtcggacgcagagagctcctccaatcac
gtggcagcctacctgcacccccacctgcaccccctgcacccctcctccccccactcgcca
tgcctgacccccgcttcgcacacgcatgcgacgtcgcacctgctggcgccccctcactct
tcggccctacctcacccccacctcctggcctctggaatgctgccggccatgccccccccg
gccacgtcgctcctggggagccacgcccgactggagtctccgggaagcctggggcacctg
gccctcgcccaccctgcagccacacaccagcagcagttcttacagggtcacggcaggacg
ccggggctcagcctttaccccatcctgtggcagtatcctaacggaacaccagcttcatac
cccccagggctcaacctgcctcccactcctaagtgggtccattctgaaactcccgtgagc
tctgactcccccctcaggaggaacaccaccagtccgtggctgcaccaggctgccagcgac
agtctgggtctgctcaaccacctgccagtccgacccgccagcgccgacgcccaccgcccc
ccagggaagatgcccgcgcactcaaacccttcaatgacgaaggccagcctgagcgttcag
aaggagacgttggcgcagctcaaacaggaccaggtggacagaagtcgtactccagcaggc
aaggatgtcctccatcaccgcctttacctggatcctcacagcacaagccgcctgggaaac
ccacaggaggccggtcagggagcggaccgagccgttaaatacaaggaggagaatcgtcag
atcctgaaggaaagcatcgaggtggcccccttcacctctaagatccagcgctccatggat
cccgtgatggaccgagagaggacgagggatccggcgttcccggtccccgtgcgagctctc
acttcccaaagccccaaggccagcctcacccaccccaacatcatccaccaggagaagagc
aactacttcaccaccttgtccaacagcgtggtgaacgagcccccgagactctacccctcc
aaggagatggctccctactacgagaaggtgtctgcggggatcgtgaccagcgttggagct
gtggtgcccagtcagggactccagtctctggggaactacagctccaaagcctccctctcc
aaaccgccccccctgataaagcaccaaccagaggggggagagggtctggcagggaaaatc
acagaacaactgagccagcaggtcacgctggtccagcagcaacatcacgcaagtgtcgac
aggatggagcgctgtagccccgccatttcttcctcctccaaccaccaccaccaccagcag
cagcagcaccaccagctcaggaccatgccgtctctttaccgggctccggtcttccacccc
cccacgcagcaggcgctggactgcaaggaagctgtggagcgggagaaggagtgggagagg
gagagagccggcttcggtgggcgtctgtctccaccgacgctcacacccatccaaccggtc
agcctggcgttggctggtaccaaaacactggtggagcagcagaagccccccacgctgttg
cctgaactcagggacatcaagagccacagggtcggtgcggcggtgacctccgtggctccc
gccaccagcgtagacgtgacggcagacgggtggagaggcagaaccgtgactcagggaagg
gaagccgtgttctccagagagagagacgcgtccagggggaagcccccggcagcagtggcc
tcggtcatcgtgggtccaacgtctgccaagtacgacagccttgttggtgctaacagatct
ggtgctattattcacaaggagcccccctcagggagattctacccatccaagctcgagggg
gaatctgccaggttcggagaaagtccgagagaacccggagctagaagggtgatccagtcc
aacgtggacgacaggtgtcagagctcgttcgtgcacggacctctaagttccagcagccct
ctgaacaggtctgctgttttagtctcatctgctgtcgacctgcagaataaaactttaaag
tcggcgttttcctctcgggatgaggttcctcacctcaaagcgggcgtcggaggctggccg
ctcggccagtcaagtgcagacaaagaaggagagaaccatgtggcgtttgactctcacgct
ggattttcaggtttgtctttgcctcaaaccaattctacggtggcatccctccccagccaa
agccccgcctcgccgtcgtactccgtctctggctcctctcagccgtactcctcctcgttt
atccacttgaaaaagcacaaagcagctctggctgcagcccagtccagaaccagcctccct
attgctcctccatctgtaacgactggaagccccaccctgtctgagtcatctgacaagact
ccaaaccacacgtcaacgcctccaccctcttgtagtcaggcctcgtcctcctctgaaagc
agtagcagtggctctgcagccgggcgctccactccgggcaagtccagccccgtacccaac
gggcagaccatggctgccgccggctgcggacaacccatcaactaccacaagctgaagaaa
gcctggttaactcgccactcggaggaggacaagaacacaaccgccactacaagctccacc
accaccaaagcagagaaactgctcaccactacgaccagcagctgcagcgccacagccatg
tcggacatgatcaggccctgcaccgtcaacctgagtgcctccacctccagcgaggtggac
atgagcaaagagggcggcagcagattggagagagagaggcaggcggaggagaagagcggc
ggggaggacaggaagtccaggcgaggacacaaacgttcctacgactccggctcagagacc
gcgggagacgactcggacggcagtgatagcaagatggagggcagggctaagcgccaaccc
aaacccacgtacaagaagaagcagaacgacatggcccggaggaggggagacgccgacaag
gacgacgatgacgggaagcccaacgggatcttcaggtcggcccgcgagaagaccaaactc
aaactggccagcagcaatgggattccccgctccgtgctgaaggattggaggaaggtcaag
aagctgaagcagaccggagagtccttcctgcaggacgactcctgttcggaaatcggaccc
aacctccagaagtgccgggagtgccgggtggtccgcagcaaaaagggggaggagccaaca
cactcgcccgtcttctgccgtttttactatttcagacggctgtccttcagtaagaatgga
gtcatccggatggacggcttctccgctccggaccagtttgacgatgaggctctggccctg
tgggtccctagtgcgatggaagacgcccacctggacaaaaccaccgccaagtacatcctg
ggcttcatcggggataagttctgccagatggttgtgaccgaaaacacggcagccagctgg
gtcaagaaggacgccaagatggcgtggaagcgagccgtgaggggggtgagggagatgtgc
gacgcctgtgaggcgacgctcttcaacatccactgggtctgtcagaagtgtggctttgtg
gtctgcttggattgttacaaggccaaggagagaaagagttccaaggataaagagctgtac
gtttggctgaagtgtgtcaaaggtcagccccacgatcacaagcacctcatgcccactcag
atcatacctggcacagcgctgacggagctggtgacctccatgcacttcctcagagacaag
cacaacatcaggtcctgctgctcctgcaccagcaaacagaacgccctcaacaagctgccc
gtcaccaacggagtctcacaggttctgcagaatgttctgaaccacagcaacaagctggcc
ctggtcaaagcagaaccaggctccctgcagaactcagagcacggaggaatcaaggccgac
accaacgggtcgggaggagggggcagcagcccgggcagcgatgcggggcggggcgcctcc
gtcacgccgccggagtcccagtcgcccctgcacttcctggctgatctggcggagcagaaa
tccagggaggagaagaaggagaaccaccagtctgcgctgctggggaaagctctgaaggag
gacaaagacggggacgccctggaggtgctgcagcagtgtaaaaccacgtccctgggggcc
ggcggcgccgagcagggctccacgctgcgagacctcctcaccaccacggcagggaagctg
aagctgggctccacagacgccggcatcgccttcgcgcccgtctactccacggcctctcag
accggaaagggggggcaggccatgcccaacatcctggatgacatcatcgcctcggtggtg
gagaacaagatcccggccagccggcagagcatcaccaccaagctgtcaatcaaacaggac
cagatcaccatggggaacaactcctgccccgccgccgccgtcacggacgacgccaaagcg
gacaggaagaagccaacgcctccagcggcgcccacgccagaggactcggtcagtcagcac
ccgggcatcccccacagctggttaagcaacaggcgcctgctgtggctgcgggatcaccgc
aaccagaacaactggaagctgttcagagagtgctggaggaagggacagccggtcctggtg
tcaggaatccataagagactgaatgccagcctgtggaaggcagactccttcaaccaggag
tttgcagaccaccagggagacctcctcaactgcaaagaccaggtggtgtcaaactctggg
atcaaggagttctgggatggatttgaggatctcaccaagcggcccaagtccaaggacgga
gagcccttggtgtaccggctgaaggactggccgtccggagaggagttcatggccctcatg
ccctccaggtacgacgacctgatgaagaacctgccccttccggagtactccgatcctgag
ggggccctcaacctggcctcccacctgccgtccttcttcgtccgtccggatctgggcccg
cggctctgctgtgcgtacggtgtcgctgcctctcaggagcaggactttgggacggccaac
ctccacctggaagtctctgacgtcgtctcggttctggtctacgttggagtagccaaaggc
aacggagtcctgtccaaaaccggagtcttgaagcgacttgaagaagaggatctggacgaa
ggcgttcggaagagactgaaagactcgagtgaaactccgggagcgctgtggcacatctac
ctcaacaaggacgtggacagaatccaggagttcctgcacaagctcagcaaggagcaggga
tccgacccgtcccaggaccaggacccggtccgagagcaggcctggtacctgagcaggaag
cagcggcagcggctgctggatgagcacggagtccacggatggaccatcgtccagttcctt
ggagactccgtcctcgttcccgcgggcgccatgcaccagatccagaacctgcacagctgt
gttcaggtcatcaacgactttgtgtccccggagcacatcgtcaagtccttccatctgacc
caggagctccgagccaacaaggaggaggtcaactatgaggacaagctgcaggtgaagaac
atcctgtaccactgtgtgaaggaggcggtgagctcgctgaagaggagcggctccgacaaa
gacgctgacgatcagacctcatga
DBGET
integrated database retrieval system
