Orcinus orca (killer whale): 101273964
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Entry
101273964 CDS
T05247
Symbol
COL5A3
Name
(RefSeq) collagen alpha-3(V) chain isoform X4
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
oor
Orcinus orca (killer whale)
Pathway
oor04820
Cytoskeleton in muscle cells
oor04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101273964 (COL5A3)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101273964 (COL5A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oor00536
]
101273964 (COL5A3)
Glycosaminoglycan binding proteins [BR:
oor00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101273964 (COL5A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
101273964
NCBI-ProteinID:
XP_004277386
LinkDB
All DBs
Position
3:complement(6686140..6726407)
Genome browser
AA seq
1750 aa
AA seq
DB search
MGPVGMGSRWALGQPRAGLCLLLVSLQLLPRTQADPVDVLKALGVRGGQAGLPEGPGLCP
QRVPQGDRAFRVGKASTLSVPTWELFQAEHFPESFSVLITLRGRPANQSVLLSVYNEAGV
RQLGLALGPALDLLGDSFSPLPQQVNLTDGRWRRVAVSVDGGMVTLVADCEPQPPVLSQG
PRFISTAGLTVLGTQDLGEETFEGDIQELLISSDPQAAFRACEQYLPGCDDLDPGATGVP
QREPETPPRRRKGKGKGKKKGRGRKGKGRKKKNKEVLALSPPPVSLENQTSADIPKTETP
APTLPPTPTPLVITTTVAIGSNVTVLEESLDPDNGTELETMETELAREEEEEGGPTMGPH
FRAAEQSWRTELQIFPGAGEKGEKGEPAVIEQGQQFEGLPGGPGPQGVVGPSGPPGPPGF
PGDPGLPGPAGLPGIPGVDGIRGLPGTVIMIPFQFARGSLKGPPVSFQQAQAQAVLQQAQ
LSMKGPPGLVGLTGRPGPTGLPGYPGLKGEMGEMGPQGPRGLQGPRGPPGRQGKMGRPGA
DGARGLPGDTGPKGDQGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGEKGAEGPPGPTGQ
AGEPGPRGLIGPRGSPGPLGRPGVVGSDGAPGAKGNVGPPGEPGPPGQQGNPGSQGIPGP
QGPIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPAGSAGPPGYPGPRGV
KGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDWGQPGPPGPRGEDGPEGLKGQVGLAGE
EGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLAPLGEKGKRGKAGQPGLEGERGP
PGSRGERGQPGATGQPGPKGDVGQDGAPGFPGEKGLPGLQGPPGFSGPKGPPGPQGKDGQ
RGHPGPRGELGFQGQTGPPGPAGVVGPQGKTGEAGPLGERGPPGPPGSPGEQGLPGLEGR
EGAKGDLGPLGPFGKEGPPGHRGFPGPQGAPGDPGPTGLKGDKGPPGPVGANGSPGERGP
VGPAGGIGLPGQSGGQGPVGPAGEKGYPGERGPPGPTGKDGIPGPLGLPGSPGAVGPSGE
EGDKGEVGAPGHKGNKGDKGDAGPPGPTGIRGLVGHPGSPGADGAQGRRGPPGLFGQKGD
DGVRGFMGVIGPPGLQGMPGPPGEKGEVGDVGSMGPHGAPGPRGPPGPSGSEGPPGLPGG
VGQPGAVGEKGEPGEPGDPGPPGIPGIPGPKGEIGEKGDAGPSGAAGPPGKKGPPGEDGA
KGNVGLTGLPGDLGPPGDPGVSGQDGPPGEKGDPGDVGGLGPPGASGEPGPSGPPGKRGP
SGRTGREGREGEKGTKGEPGPDGPPGRTGPVGTRGPPGRVGPEGLRGIPGPVGEAGLLGP
PGQLGPPGPLGPSGLPGLKGDAGLKGEKGHIGLIGLVGPPGEAGEKGDQGLPGVQGPPGL
QGEPGSPGPIGSLGHPGPRGVVGPPGQKGSKGSLGSQGPRGDTGPPGPPGPQGPSAQLHG
LRRRRRSVPSPGVPEGGLEEVLASITSLSFELEQLRRPPGTAENPGLVCSELHRNHPHLP
DGEYWIDPNQGCARDALRVFCNFTAGGETCLYPDKKFETVKLASWSREKLGSWYSTFRRG
KKFSYVDADGAPVSVVQLTFLKLLSATARQSFTYSCQNSAAWLDEAAGDHGRSVSFLGTN
GEELSFNQTAAATITVPYDGCRLRKGQTKTLFQFSSSRVGFLPLWDVASADFGQTNQKFG
FELGPVCFSS
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atgggtcccgtgggaatggggagtcgctgggccctgggccagccgcgggccggcctctgc
ctgctcctggtgtctctgcagcttctcccccggacgcaggccgaccctgtggatgtgctg
aaggccctgggcgtgcgggggggccaggctgggctccccgagggtcccggcctctgcccc
cagagggtcccgcagggcgaccgggcattcagggtgggcaaggccagcacgctcagtgtc
cccacgtgggagctctttcaagccgagcactttcccgagagcttctccgtgctgatcact
ctgcgtggccggccagccaaccagtctgtccttctatccgtctacaatgaggccggtgtc
cggcagctgggcctggcgttggggccggctctggacctcctaggtgactccttcagcccc
ctcccccagcaggtcaacctcacggacggcaggtggcgccgtgtggcggtcagtgtggat
ggtgggatggtgaccctggtggctgactgtgaacctcagccccccgtattgagccaggga
cctcgattcatcagcacggctggacttactgtgctggggacccaggacctcggggaggag
acttttgagggagatattcaggagctgctgataagctcagatcctcaggctgccttccga
gcctgtgagcagtaccttcctggctgtgacgacctggatcctggagccacaggggtaccc
cagcgggagccagaaacccctccccgtcggcggaaggggaagggaaaagggaagaaaaaa
gggcgaggtcgtaaggggaagggcaggaagaagaagaacaaggaagttttggccctgagc
ccacctcccgtctccctggagaaccagacctccgctgacatccccaagacagagacacca
gctccaactctgcctccaactcccacgcctttggtcatcaccacgactgtggccataggc
agcaacgtcaccgtcctagaggagagcttggaccccgacaatggaactgaactggagacc
atggagactgagttagccagagaagaagaagaagaaggtggtcccaccatgggcccccac
ttccgggcagcagaacagtcatggagaactgagttgcagatcttccctggcgctggggag
aagggagaaaaaggagaaccggccgtgattgaacagggacagcagtttgaaggacttcca
ggaggcccaggaccccaaggggtggttggcccctcaggtcctcctggcccgccaggattc
cctggggaccctggtctaccgggccccgctggcctcccaggaatccctggcgttgatggg
atccggggtctaccaggcactgtgatcatgataccgttccagtttgcaagaggctccctc
aaaggacccccagtctccttccagcaggcccaggctcaggcagtcctgcaacaggctcag
ctctctatgaaaggcccccctggcctggtggggctcaccgggcgcccaggccccacgggt
ctccctgggtatccaggtctaaaaggagagatgggagaaatggggccacagggcccccga
ggacttcagggacctcgtggaccccctggcagacagggaaagatgggccgccctggagca
gatggggctcgaggcctcccaggggacacaggacctaagggtgatcagggctttgacggc
ttgccagggctgcctggagagaagggccagaggggtgactttggtcatgtggggcaacct
ggccccccaggagaggatggtgagaagggagcagagggacctccggggcccaccggccag
gctggggagccgggcccccgaggactgattggtcctagaggctcccctggccccttggga
cgcccgggtgtagttggaagtgacggtgctccaggtgccaaaggaaatgtgggtcctcca
ggagaaccaggccccccaggacagcagggaaatcccgggtcccagggaatccccggcccc
cagggacccattggcactcctggggagaagggtccccctgggaacccaggaattccaggc
ctcccaggatctgatggccctctgggtcacccaggtcatgagggcccaacaggagagaaa
ggggcccagggtccagcagggtcggcaggccctccgggctatcctggacctcggggtgtg
aagggtacctctggcaaccggggcctccagggggagaaaggagagaagggagaggatggc
ttcccaggcttcaagggtgatgtagggcttaaaggcgattgggggcaacccggaccccca
ggtcctcggggagaggatggtcctgaagggctgaaggggcaggtgggacttgctggtgag
gaggggcccccaggctcagctggggagaagggcaagcttggggtgccgggtctcccaggt
tacccaggacgtccaggccctaagggatctattggctttcccgggcccctggcaccatta
ggagaaaaagggaagcgggggaaggctgggcagccaggcctggaaggagagcggggacca
ccaggctcccgtggagagagggggcaaccaggtgccacagggcaaccaggccccaagggt
gatgtgggccaggacggagcccctgggttccctggagaaaagggcctcccaggtctgcaa
ggccctcctgggttctctggaccaaagggtccccctggcccccaagggaaagacgggcaa
cgtgggcaccctggacctagaggagaattgggcttccaaggtcagacaggcccacctgga
ccagctggtgtcgtgggtcctcagggaaagacgggagaagcagggcctctgggtgagagg
gggcccccaggcccccctggatctcctggtgaacaaggtcttccgggcctggaaggcaga
gagggggccaagggggacctgggaccactgggaccctttgggaaggaagggccacctgga
cacaggggcttccctggtccccaaggagcccccggggacccaggacctactggtttgaag
ggtgacaagggcccccccggccccgtcggggctaacggttcccctggggagcgcggtcct
gtaggcccagcagggggcattgggcttcctggccaaagtggaggccaaggtcctgttggc
cctgcaggcgagaaggggtacccgggtgaacgcggcccccctggtcccactggcaaagac
ggaatcccagggcccctggggcttcctggatcccctggagctgtggggccttctggcgag
gaaggggacaagggagaagtgggagccccaggtcacaaaggcaacaaaggcgataagggg
gatgcgggcccacctggaccaacagggatacggggtcttgtgggacacccaggctccccg
ggggcagatggggctcagggacgccggggacctccaggcctctttgggcagaaaggagat
gatggagtgagaggcttcatgggggtgattggcccccctggcctgcaggggatgccaggc
cctcctggagaaaagggggaagttggagacgtagggtccatgggtccccatggagctcca
ggccctcggggtcccccgggccccagcggatcagagggtcctccagggctgcctggggga
gttggtcagcctggagccgtgggcgagaagggtgagccaggggagcctggagacccggga
cccccaggaatcccaggcatccctgggcccaagggagaaattggtgaaaagggggatgca
ggcccatctggggcagctggacccccgggcaagaaaggcccccccggagaggatggagca
aaagggaacgtgggcctcacagggctcccaggagacctaggcccccccggagaccctggg
gtttcgggtcaagacggccccccaggggagaagggagaccctggagatgtggggggactg
ggtccacctggtgcttctggggaacccggtccctctgggccccctggcaaaaggggtcct
tctggtcgcacgggtcgagaaggcagagaaggggagaaaggtaccaagggggaaccaggt
cctgacgggcccccagggaggacaggcccagtggggactcgagggccccctgggcgtgtc
gggcctgagggtcttcgagggatccccggccctgtgggtgaagcaggcctgctgggacct
cctggacagttgggccctcctggccccctggggccctctggcctcccagggctgaaggga
gatgctggcctcaagggggaaaagggccacatcggattaattggtctcgttggcccccct
ggggaggctggtgagaaaggggatcagggtttgccaggagtgcaaggcccccctggcctc
cagggagaacctggttcccctggtcccatcggctctctgggccaccctggaccccgaggt
gtggtgggtcctccaggacagaaaggttcaaaggggtccctgggatcccaaggtccccgc
ggagacactggacccccaggtccccccggcccccagggtccatctgcgcagctgcacggg
ctgcgccggcgccggcgctcggtcccgagcccgggagtcccggagggcggcctggaggag
gtgctggcctcgatcacgtcgctgagcttcgaactggagcagctgcgacgccctccgggc
acggctgagaacccgggcctcgtgtgcagcgagttgcaccgcaaccacccgcatttgccc
gacggggaatactggattgaccccaatcagggctgcgcgcgggatgcgctcagggttttc
tgcaacttcacggcgggaggagagacctgcctttacccagacaagaagtttgagaccgtg
aaactggcctcctggtccagagaaaagctgggaagctggtatagcacattccgtcgaggg
aagaagttctcctacgtggatgctgatggggccccggtgagtgtggtgcagttgaccttc
ctgaagttgctgagtgccacagcccgccagagcttcacatactcctgccagaactcggct
gcctggctggacgaagctgcaggagaccatggccgctctgtcagtttccttgggaccaac
ggggaggagctgtccttcaaccagacggcagcagccaccatcactgtcccctacgacggc
tgcaggctccggaagggacagacgaagaccctcttccagttcagctcttcccgagtggga
tttctgcccttatgggatgtggcgtctgctgactttggccagacgaaccagaaatttggg
tttgaactgggccccgtctgctttagcagctga
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integrated database retrieval system
