Orcinus orca (killer whale): 101280840
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Entry
101280840 CDS
T05247
Symbol
VCL
Name
(RefSeq) vinculin isoform X2
KO
K05700
vinculin
Organism
oor
Orcinus orca (killer whale)
Pathway
oor04510
Focal adhesion
oor04520
Adherens junction
oor04670
Leukocyte transendothelial migration
oor04810
Regulation of actin cytoskeleton
oor05100
Bacterial invasion of epithelial cells
oor05146
Amoebiasis
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101280840 (VCL)
04520 Adherens junction
101280840 (VCL)
09142 Cell motility
04810 Regulation of actin cytoskeleton
101280840 (VCL)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
101280840 (VCL)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
101280840 (VCL)
09174 Infectious disease: parasitic
05146 Amoebiasis
101280840 (VCL)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
oor04812
]
101280840 (VCL)
04147 Exosome [BR:
oor04147
]
101280840 (VCL)
Cytoskeleton proteins [BR:
oor04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
101280840 (VCL)
Exosome [BR:
oor04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101280840 (VCL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vinculin
VMAP-M0
Motif
Other DBs
NCBI-GeneID:
101280840
NCBI-ProteinID:
XP_004273139
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Position
14:31852540..31958334
Genome browser
AA seq
1134 aa
AA seq
DB search
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE
TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ
ELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAE
INEIIRVLQLTSWDEDAWASKDTEAMKRALASIDSKLNQAKGWLRDPSASPGDAGEQAIR
QILDEAGKVGELCAGKERREILGTCKMLGQMTDQVADLRARGQGASPVAMQKAQQVSQGL
DVLTAKVENAARKLEAMTNSKQSIVKKIDAAQNWLADPNGGPEGEEQIRGALAEARKIAE
LCDDPKERDDILRSLGEISALTSKLADLRRQGKGDSPEARALAKQVATALQNLQTKTNKA
VANSRPAKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGHRLANVMMGPYRQD
LLAKCDRVDQLTAQLADLAARGEGESPQARALASQLQDSLKDLKARMQEAMTQEVSDVFS
DTTTPIKLLAVAATAPPDAPNREEVFDERAANFENHSGRLGATAEKAAAVGTANKSTVEG
IQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDTK
SLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAKREVENSEDPKFR
EAVKAASDELSKTISPMVVDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQPQEP
DFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMM
AARQLHDEARKWSSKPGNPAAKVGISAVAEADAADAVGSPLPPEMEDDYEPELLLMPSSQ
PVNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAK
DIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNIS
DEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgtttcatacgcgcacgattgagagcattctggagccggtcgcgcagcagatc
tcgcacctggtgatcatgcacgaggaaggcgaggtggatggcaaagccatccctgacctc
accgcgcctgtggccgccgtgcaggcggccgtcagtaacctcgttcgggttggaaaagag
actgttcaaaccactgaggatcagattttgaagagagatatgccaccagcatttattaag
gtggagaatgcttgcaccaagcttgtccaggcagcccagatgcttcagtcagacccttac
tcagtgcctgctcgagattatctaattgatggatcaaggggcatcctctccggcacatca
gacctgctcctcaccttcgacgaggctgaggttcgtaaaattattagagtttgcaaagga
attttggaatatcttacagtggcagaggtggtggaaactatggaagatttggtcacttac
acaaagaatcttggaccaggaatgactaagatggccaagatgattgatgagaggcagcag
gaactgactcaccaggagcaccgagtgatgttggtgaactcaatgaacaccgtgaaagag
ttgctgccagttctcatttcagctatgaagatttttgtaacaactaaaaactcaaaaaac
caaggaattgaagaagctttgaaaaatcgtaattttactgtagaaaagatgagcgctgaa
attaatgagatcattcgtgtattacaactcacttcttgggacgaagatgcctgggccagc
aaggacactgaagccatgaagagagcgttggcctccatagactccaaactgaaccaggct
aaaggttggctccgtgaccccagtgcctccccaggtgatgctggtgaacaggccatcagg
cagatcttagatgaagctggaaaagttggtgaactctgtgcaggcaaagaacgcagggag
atcctgggaacctgcaaaatgctagggcagatgactgatcaagtggctgacctccgagcc
agaggacaaggagcctcaccggtggccatgcagaaagcccagcaggtgtctcagggtctg
gatgtgctcacagcaaaagtggaaaatgcagcccgcaagctggaagccatgaccaactca
aagcagagcattgtgaagaagattgatgctgctcagaattggcttgcagatccaaatggt
ggaccagaaggagaagaacagattcgaggggctttggctgaagctcggaaaatagcagaa
ttgtgtgatgatcctaaagagagagatgacattctacgttctcttggagaaatatctgct
ctgacttctaaactagcagatctacgaagacagggaaaaggagattccccagaggcccga
gcattggccaaacaggtggccacggccctacagaacttgcagaccaaaaccaacaaggca
gtggccaacagcagacctgccaaagcagctgtccaccttgagggcaagattgagcaggca
cagcggtggattgataatcccacagtggatgaccggggagttggtcaggctgccatccga
gggcttgtggccgaaggtcatcgtctggcaaatgtcatgatggggccttatcgccaagat
cttcttgcaaagtgtgaccgagtggaccagctgacggcccagctggctgacctggctgcc
agaggggaaggggagagtcctcaggcgagagcccttgcatctcagctccaagactcttta
aaggatctgaaagcccggatgcaggaggccatgactcaggaggtgtcagatgttttcagt
gatactacaactcccatcaagctgttggcagtggcagccactgcccctcctgatgcaccc
aatagggaagaggtatttgatgagagggcagctaactttgaaaaccattcaggaaggctt
ggagccacggcagagaaggcggctgctgttggaactgctaataaatcaacggtggaaggc
attcaggcctcagtgaagacagcccgagaactcacaccccaggtcgtctcagcggctcgc
atcttacttaggaatcccggaaatcaagctgcttatgaacattttgagaccatgaagaac
cagtggatcgataatgttgaaaaaatgacagggctggtggacgaagccattgacaccaaa
tctctgttggatgcttccgaagaagcaattaaaaaagacctggacaagtgtaaagtcgcc
atggccaatattcagcctcagatgctggtcgctggggcaaccagcattgctcgtcgggcc
aaccggatcctgctggttgctaagagggaggtggagaactctgaggatcccaagttccga
gaggccgtgaaagccgcctctgacgaattgagcaaaaccatctccccaatggtggtggat
gcaaaggctgtggcaggaaacatttctgaccctggcctgcaaaagagcttcctggactcg
ggataccggatcctgggagcagtggccaaggtcagagaagccttccaacctcaggagcct
gacttcccgcctcctccgccagaccttgaacagctccgactgacagatgagcttgctcct
cccaaaccacctctgcctgagggtgaggtccctcctcccaggcccccaccaccagaggag
aaggatgaagagttccctgagcagaaagctggggaggtgattaaccagccaatgatgatg
gctgccaggcagctccatgatgaagctcgcaaatggtccagtaagccgggtaacccagcc
gctaaggtgggtataagtgctgtagctgaggcagatgcggctgacgctgttgggtcccct
ctcccccctgaaatggaagacgattacgaacctgagctgctgttaatgccatccagtcag
ccggtcaaccagcccattctggcagcggctcagtcattgcatcgggaagctaccaagtgg
tctagtaagggcaatgacatcattgcagcagccaagcgcatggctctgctgatggctgag
atgtctcggctggtcagagggggcagcggtaccaagcgggcactgattcagtgtgccaag
gacatagccaaggcctcagatgaggtgactcggttggccaaggaggttgccaagcagtgc
acagataagcggattagaaccaacctcttacaggtatgcgagcgaatcccaaccataagc
acccagctcaaaatcctgtccacggtgaaggccaccatgctgggccggaccaacataagc
gacgaggagtctgagcaggccacagagatgctggttcacaatgcccagaacctcatgcag
tctgtgaaggagactgttcgagaagcagaagcagcttcaatcaaaattcgaacagatgct
ggatttacactgcgctgggttagaaagactccctggtaccagtag
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