Oceanithermus profundus: Ocepr_0915
Entry
Ocepr_0915 CDS
T01369
Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
opr
Oceanithermus profundus
Pathway
opr03030
DNA replication
opr03410
Base excision repair
opr03420
Nucleotide excision repair
opr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
opr00001
]
Genetic Information Processing
Replication and repair
03030 DNA replication
Ocepr_0915
03410 Base excision repair
Ocepr_0915
03420 Nucleotide excision repair
Ocepr_0915
03430 Mismatch repair
Ocepr_0915
Enzymes [BR:
opr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Ocepr_0915
6.5.1.6 DNA ligase (ATP or NAD+)
Ocepr_0915
6.5.1.7 DNA ligase (ATP, ADP or GTP)
Ocepr_0915
DNA replication proteins [BR:
opr03032
]
Eukaryotic Type
DNA Replication Elongation Factors
Other elongation factors
Ocepr_0915
Prokaryotic Type
Elongation factors (archaeal)
Other elongation factors
Ocepr_0915
DNA repair and recombination proteins [BR:
opr03400
]
Eukaryotic Type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
Ocepr_0915
NER (nucleotide excision repair)
Other NER factors
Ocepr_0915
MMR (mismatch exicision repair)
Other MMR factors
Ocepr_0915
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Other DBs
NCBI-ProteinID:
ADR36372
UniProt:
E4U4G9
LinkDB
Position
930355..932070
AA seq
571 aa
MTFQRFVATLLEVERASSRIAMVKMLAEAFRELPPEEVPLAVLLLQGRVAPEFEGLEFGV
AEKEAAKALALALGRDEAETVQAVKEKGDIGAYALEVLPRRAGGLSLRHVYGELRAIAED
AGPGSQARKRERLSRLVAEASPEEAAVILRTVTGRLRLGVGDATVLEALALAFLGDRAKK
PLLERAYNLTSDLAYVARLALEGEEALRQVKLEVGKPVRMMLAERLPGPEQIMEKLGPHF
AEHKYDGERVQVHFDGERFWVYSRRLENITHQYPDLLEALREVQHGPFILEAEAVVTDPV
TGEMRPFQNVLNRKVKHLTPELLEKYPIKGFVFELLYADGEVLIERPYSERRERLERWFR
PHERLELSTKRFVETTEELVQFFDASIEAGCEGLVCKKPDGDYEAGKRGFKWVKYKRGIA
GKLSDTLDLVIVGAWLGRGRRAGTYGSLLAAAYNPDEDRFETLTKVGSGFSDEDLNEVLP
RRLDPYRRGERHPRVWSLLEPDVWFEPVQVIEVEAQEITLSPNHTCAFGAVQEGRGLALR
FPRFVRYRDDKSPEEATTTKEVVEMYKNQWA
NT seq
1716 nt
+upstream
nt +downstream
nt
atgaccttccagcggttcgtcgcgacgctgctcgaggtggaacgggcgagctcgcggatc
gccatggtgaagatgctggccgaagccttccgcgagcttccgcccgaggaggtgccgctt
gcggtgctgctccttcaaggtcgggtggcccccgaattcgaggggctcgagttcggcgtg
gctgagaaggaggcggccaaggcgttggcgctggcgctggggcgggacgaagcggagacc
gtccaggccgtcaaggagaagggcgacatcggcgcctatgcgctcgaggtgctgccccgc
agggccggaggtttgtccttgcggcacgtctacggcgagctgcgcgccatcgccgaggac
gccggtcccggttcccaggcgcgcaagcgcgagcgcctgtcgcgcctcgtcgccgaggcc
agccccgaggaggcggcggtgatcctgcgcaccgtgaccgggcggctgcgcctgggggtg
ggcgacgccacggtgctggaggccctggcgctggccttcctgggcgaccgcgccaagaag
ccgctcttggagcgggcctacaacctgacctccgacctggcctacgtggcgcggctggcc
ctggagggtgaagaggcattgcggcaggtgaagctcgaggtgggcaagccggtgcggatg
atgctggccgaacggctgccgggccccgagcagatcatggagaagctgggcccccacttc
gccgagcacaagtacgacggcgagcgggtgcaggtgcacttcgacggcgagcgcttctgg
gtctactcgcgccggctcgagaacattacccaccagtaccccgacctgctggaggcgctg
cgcgaggtgcagcacggacccttcatcctcgaggccgaggcggtggtcaccgacccggtg
accggcgagatgcgcccattccagaacgtgctcaaccgcaaggttaagcacctgacgccc
gagcttctggagaagtaccccatcaagggcttcgtcttcgagctgctctacgcggacggc
gaggtcttgatcgagcgcccctacagcgaacggcgcgagcggctcgagcgctggttccgc
ccccacgagcggctcgagctttccaccaagcgcttcgtcgagacgaccgaggagctggtc
cagttcttcgacgcctccatcgaggccggttgcgaggggctggtctgcaagaagcccgac
ggcgactacgaagccggcaagcgcggcttcaagtgggtcaagtacaagcgcggcatcgcc
ggcaagctctccgacaccctcgacctggtcatcgtcggcgcctggttggggcgggggcgg
cgcgccggcacctacggctcgctgctggccgcggcctacaaccccgatgaagaccgcttc
gagaccctcaccaaggtgggttcggggttcagcgacgaggacctgaacgaggtgctgccc
cggcggctcgacccctaccgccgcggggagcggcacccgcgcgtctggtcgctgctcgag
cccgacgtctggttcgagcccgtccaggtcatcgaggtcgaggcccaggagatcacgctc
agccccaaccacacctgcgccttcggtgcggtccaggaaggccgcggcctggccctgcgg
ttcccccgcttcgtccgttaccgcgacgacaagagtcccgaggaggcgaccaccacgaag
gaagtggtggagatgtacaagaaccagtgggcttag
DBGET
integrated database retrieval system
