KEGG   Ochrobactrum pseudogrignonense: A8A54_15370Help
Entry
A8A54_15370       CDS       T04415                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ops  Ochrobactrum pseudogrignonense
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:ops00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    A8A54_15370
   03410 Base excision repair
    A8A54_15370
   03420 Nucleotide excision repair
    A8A54_15370
   03430 Mismatch repair
    A8A54_15370
Enzymes [BR:ops01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A8A54_15370
    6.5.1.6  DNA ligase (ATP or NAD+)
     A8A54_15370
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     A8A54_15370
DNA replication proteins [BR:ops03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    A8A54_15370
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     A8A54_15370
DNA repair and recombination proteins [BR:ops03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     A8A54_15370
   NER (nucleotide excision repair)
    Other NER factors
     A8A54_15370
   MMR (mismatch exicision repair)
    Other MMR factors
     A8A54_15370
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
1:3284576..3286195
Genome map
AA seq 539 aa AA seqDB search
MRAFAELLDRLVLTPQRNGKLRLLVDYFRTTPDPDRGLALAAITRDLELQSVKPAMLRAL
ITERSDPTLFAYSYDYVGDLAETISLIWPGPNETPAGANLPLSVVVHELQNASRREGPLL
VAGWLDLLGISERYALLKLVTGGLRIGVSARLAKQALADFGGVDVVEIEELWHGQTQPFT
ALFAWLEGHGPKPAATADAPFRPVMLATALDEAEIPALDPSAYSAEWKWDGIRVQAVAEN
GVRRLYSRTGDDISGTFPDVLEAMDFEGSIDGELLVGHHGKTGIETATFSDLQQRLNRKT
VTAKQLREYPAFIRAYDLLHDGTQQSGEDLRSLPFSERRARLAQFIEKLDKRRFDLSPVL
QFSDFDELAELRLNPPHPVIEGLMLKRHDSAYVPGRPKGPWFKWKRDPFTVDAVVVYAQR
GHGKRSSYYSDFTFAVWTGPEEDPMLVPVGKAYFGFTDEELKLLDKFVRENTIERFGPVR
SVRAEPDHGLVVEVAFEGLNRSTRHKSGVAMRFPRFSRLRWDKPPREADRLETLEKLLS
NT seq 1620 nt NT seq  +upstreamnt  +downstreamnt
atgcgtgcttttgctgaacttctcgaccgccttgtcctcacgccacagcgcaatggcaaa
ttgcggctgctggtcgattatttccgcaccacacccgacccagatcgtggccttgcactt
gccgccatcacccgtgatcttgaattgcaaagcgtcaagcctgctatgctgcgggcgctg
attaccgagcgcagcgatccgacgctttttgcctattcctatgattatgtcggtgatctt
gccgaaacgatttcgctgatctggcctggcccgaacgaaaccccggcgggtgccaacctg
ccgctcagcgtcgtcgtgcatgaactgcaaaacgcctcgcgccgtgaggggccgttgctc
gtggctggctggctcgacctgcttgggatatcagagcgctatgctcttttgaaacttgtc
acaggtggcttacgcattggcgtttccgctcgtctagccaaacaggcactggcagatttt
ggtggcgtggatgtcgtggaaatcgaagaactttggcacggacagacgcaacccttcaca
gcgctgtttgcatggcttgagggccatggccccaagcctgctgccactgccgacgcacca
ttccggcccgtcatgcttgccacggcactggatgaggccgaaattccagcacttgatcca
tcagcctatagtgccgaatggaaatgggacggtattcgtgtgcaggccgttgcagaaaat
ggcgtgcggcggctttattcgcgcactggcgacgacatttccggcacttttcccgatgtg
ctggaggccatggatttcgaaggctctattgatggcgaattgctggtaggccatcacggc
aaaacgggcatcgaaaccgcaaccttttcagatttgcagcagcggcttaatcgcaaaacg
gtgacggccaaacagttgcgcgaatatccggccttcatccgcgcatacgaccttctgcac
gatggcacgcagcagtcgggcgaagatttgcggtcgttacccttctcggaacgacgagcg
cgtctcgctcaattcatcgaaaagctcgacaagcgccggtttgatttgtcgccagtcctt
cagttttcagacttcgacgagctcgcggaattgcgtcttaaccctccacatccggtgatc
gaaggccttatgcttaaacggcatgacagcgcctatgtgccggggcgcccgaaagggcca
tggttcaaatggaaacgcgatccgttcacagtggatgcggtggtggtctatgcacagcgt
ggccacggcaaacgctcaagctactattcggacttcactttcgcggtctggaccggcccc
gaagaagaccccatgctcgtacccgtcggaaaggcctatttcggcttcaccgacgaggaa
ttgaagcttctcgacaaattcgtgcgcgaaaacacgattgagcgttttggcccggtgcgt
tccgttcgcgcggaaccggatcatggattggtcgttgaagttgcctttgaagggctcaac
cgctcaacccgccacaaatccggtgtcgcaatgcgctttccccgcttctcgcgactgcgc
tgggacaagccgccccgcgaagcagaccggcttgaaacactcgaaaagctgctgagttga

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