Oryza sativa japonica (Japanese rice) (RefSeq): 4324336
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Entry
4324336 CDS
T01015
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03013
Nucleocytoplasmic transport
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4324336
09122 Translation
03013 Nucleocytoplasmic transport
4324336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4324336
03041 Spliceosome [BR:
osa03041
]
4324336
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
4324336
Spliceosome [BR:
osa03041
]
Complex C
Other components
EJC/TREX
4324336
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
4324336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
HetE-N
PDZ_3
Motif
Other DBs
NCBI-GeneID:
4324336
NCBI-ProteinID:
XP_015615751
LinkDB
All DBs
Position
1:complement(39960255..39976012)
Genome browser
AA seq
1779 aa
AA seq
DB search
MSPPLQAPDYKHVTEECLREWKGQPAAAAAFRVPDPVPMARFLYELCWAVVRGDLPPQKC
RVALDSVEFVEEAQRGEVGSVLADIIAHLGQDVTISGEYRSRLVKMTKSFVESSLIAPRL
LQERCEEEFLWEVELSKSKGQDLKAKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQ
IGSDLACQNSSSVTMSIIKSLIGHFDLDPNRVFDIVLECFELYPDNTIFCQLIPLFPKSH
AAQILGFKFQYYQRLDVNSTVPPGLFRIAALLVKSGFIDLDSLYAHLLPNDDEAFEHFDS
FVTRKIDEASNIGKINLAATGKDLMDDEKQEITIDLYTALEMENDIIDERAPEIEKNQKL
GLLLGFLSVHDWDHAQLLFERLARLNPVEHVEICDSLFRLIERSISSVYDIIFQTHYKMP
RNPVYMMDTSPSSSQSFSVDPPKEFFQMLSACGPYLHRNTQLFQKVCRVLKAYHLSAKES
IRTAGVMSPDSRIEEALGSCLLPSLQLIPANPAVDMEIWGVLSLLPYETRYRLYGEWEKD
TEQNPIVLAARQTAKLDTRRLLKRLAKENLKQLGRMVAKLAHANPMTVLRTIIQQVEAYR
DMITPVVDAFKYLTQLEFDILQYIVIERLAQGGREKLKDDGLNLSDWLQCLASFWGHLCK
KHHSVELRSLFQYLVNQLKKDTGIELVVLEELIQQMANVQYTENMTEEQVDAMAGSETLR
LQASSLFGSTRNSKVLTKSTNKLRDSLLPKEEPKLAIPLLLLIAQHRSKIIINADATYIK
MVSEQFDRCHGILLQYVEFLSTAVTPTTYVQLIPPLEDLINKYHIEPDVAFLIYRPVMRL
FKSTNGGDTYWPLDDNEEGESVSCDDLILHPDTSHKSIMWSDLLSTVRNTFPAKTWNGLS
PDLYATFWGLTLYDLHFPKDRYDAEIKKLHENLKQLEDNSDNSSIAISRRKKDKERIQDL
LDKLNNESHKHQQHIASVLQRLGREKVKWLNSSPDALKINMEFFQRCIFPRCVFSMQDAV
YCAMFVQTLHSLETPFFNTVNHIDVFICKTLQPMICCCTEYEAGRLGRFLHETLKMAYRW
KSDESLYERECGNKPGFAVYIRYPNSQRVSYSQFVRVHWKWSGRITKVLNQCMESKEYME
IRNALIVLTKISSIFPVIRKSGVNLEKRVAKLKGDEREDLKVLATGVAAALAARKSSWLS
EEEFGMGLLDLKQGPAKIVPGNQSADPLTAKDQSVRAKSIEGRHERSEAAMKPDAQQKKN
ALAANGSDNQMPSSSAQGKVSGIIRGSDEPPKLLSDEGVKVSKPTAESETRVPQKRVAHN
AGKVSKHDMVKEDTKSGKSTNRGVTQQGSSVPVDKEVLSQAADGVQDTTSNSLAASNGNL
HTAPRKVSASSQKSTLLATHTGGAANSSGESTDLIDSNMKQQKRFVPTEEQDRGTKWRKG
ESEGRDGDFTEHTDKDRNLDSRLVDKFRPMDHDKSASEEQILSRPEKSKEKADDKYDRDP
REKADRTERRRGEDIERPTDKSLERRERSIERMQERGTDRAPDKGREDRNKEERNKVKHA
EPSIDRAHPSDERFRGQSLPPPPPLPASFVPQSVGNRRDEDTDRRGGSTRHNQRSSPRRD
DKEKWHLEDNAASLQDDGKHRREEDIRDRKREDRDVSSSKVDDRDRDKSSIVKDESDPNS
ASKRRKIKRDQSGLEAGEYAPSAPQLPSHGTSSSQVFETRERERKGAISQHRISHADDLP
RIHGKDSSKTSRREADQVHEREWEEEKRSRTETKRKHRK
NT seq
5340 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccccctctccaggcgcccgactacaagcacgtcacggaggagtgcctccgcgag
tggaagggccagcccgccgccgccgccgccttccgcgtccccgatccggtccccatggcg
cgcttcctctacgagctctgctgggcggtggtgcggggggacctgccgccgcagaagtgc
cgggtggctctggactcggtggagtttgtggaggaggcgcagcgaggggaggtcggctca
gtactcgccgacatcatcgcccacctagggcaggatgttacaatctctggtgaatatcgc
agccgtcttgtcaaaatgaccaaatcatttgtggagtcgtcattgattgcgcctaggctc
cttcaagagcgatgcgaggaagagttcctctgggaggttgaactgagtaagtcaaagggg
caggatttgaaggctaaggaggtcagggtcaacacacgtctcctttatcagcaaactaaa
ttcaaccttttaagagaggaaagtgagggctacgccaaattggtaaccctcctttgtcaa
attggttcagatttggcttgtcaaaattcttcttcagttactatgagcattataaagtca
ttgattgggcattttgacctggacccaaatcgtgtgtttgatattgttctggaatgtttt
gagctctatccggataataccatcttttgtcagcttatacctcttttccctaagtcccat
gctgctcaaatattggggttcaagttccaatattaccaacgattggatgtcaatagcact
gttccacctgggcttttccggatagcagctttgttggtcaaatctggttttattgacctt
gatagcctctatgctcatttacttccaaatgatgatgaggcatttgagcattttgactcc
ttcgtcacgaggaaaatcgatgaggctagtaatataggcaaaataaatcttgctgccact
gggaaggaccttatggatgacgagaagcaagaaataactattgatttgtacacagcattg
gagatggaaaatgatataattgatgagcgagcccctgagattgaaaagaaccagaaactt
ggacttcttcttggtttcctgtcagttcatgattgggatcatgcacaactcctctttgag
cgtcttgcacgcctaaatcctgttgagcatgttgaaatttgtgatagtttatttagactt
attgaaaggagtatttcttcagtctatgatataattttccaaacacattataagatgcct
cgtaaccctgtttatatgatggacacatcaccttcctcttcacaaagtttttcggttgat
ccgccgaaagagtttttccaaatgctttctgcttgtggaccataccttcatcgtaacaca
caattatttcagaaggtttgcagagtacttaaagcgtaccatctgtcagcaaaagagtca
atccgtacagcaggtgtaatgtctccagactcgcgaattgaagaagcacttggatcgtgc
ttgctaccatcattgcagcttatacctgcaaatcctgctgttgatatggagatatgggga
gttctttctcttcttccttatgagacccgttatcgcttatatggtgaatgggagaaggat
accgaacaaaacccaattgtccttgctgcaaggcaaactgcaaagttggataccagaagg
ctcttaaagcggcttgctaaggaaaatctgaagcaacttggccgcatggtggctaaactt
gcccatgcaaatccaatgacagtacttcggacaattatccaacaggttgaagcatatagg
gacatgataactccagtcgtcgatgcttttaaatacttgactcagctggagtttgacatc
ttgcaatatattgtaattgaacgcttggctcaaggtggccgtgagaaacttaaagatgat
ggtcttaatctatctgattggcttcagtgtcttgcatcattctgggggcacctgtgcaag
aagcatcattcggtggagctaagaagcctttttcagtaccttgttaatcagctgaagaaa
gacacaggcattgagcttgttgtactcgaggaactcattcagcaaatggcaaatgtgcaa
tacactgagaacatgactgaggagcaggttgatgctatggcagggagtgaaacattgcgg
cttcaagcttcatcactatttggatcaacaagaaattctaaggttctgaccaagtctaca
aacaaattgagggattctttgcttccaaaagaagaacctaaacttgccattcccctttta
ctgcttattgctcagcatcgatccaagattataattaatgctgatgccacatatatcaaa
atggtcagtgagcagtttgatcggtgccatggaatactacttcagtatgttgagtttctt
tcaactgcagtaactccaacaacttatgttcaactaatacctccgctggaagatctgatt
aataagtatcatatcgagcctgacgttgcttttcttatataccgacctgtgatgagactt
ttcaaaagcactaatggaggtgacacctattggcctttggatgacaatgaagaaggggag
tctgtatcatgtgatgatctgatattgcatcctgacacatctcataagtcaatcatgtgg
tctgatcttcttagcacagtccggaacactttcccagcaaaaacctggaatggtttatca
cctgatttatatgctactttctgggggttaacactatatgatcttcatttccccaaagat
cgttatgatgcagaaataaagaagctgcatgaaaatcttaaacaactggaagataattcg
gataactctagtattgcaatctcacgacgcaagaaggacaaggagagaatccaagatttg
cttgacaaattgaacaatgaatcacataagcaccaacaacacattgcatcagtgctccaa
aggctaggtcgtgaaaaggttaagtggttaaattccagtccagatgctctgaagatcaac
atggaatttttccagcgctgcatattccctcgctgtgtttttagcatgcaagatgctgtg
tattgtgctatgtttgtccaaacactgcactcactcgagactccatttttcaacacggtg
aatcatatcgatgttttcatctgcaaaactctacagccaatgatttgttgctgcacagag
tatgaggctggcaggctgggaaggtttcttcatgagacactgaagatggcctaccgttgg
aagagcgatgaatctttatatgagcgtgaatgtggaaataagccaggtttcgctgtgtac
atcagatatccaaatagccagcgtgtatcttatagccagtttgttcgagttcattggaag
tggagtggacgaataactaaggtgctgaaccagtgcatggaatcaaaagaatacatggaa
atcagaaacgcccttattgtgctcacaaagatatctagcatttttcctgtgatacgcaaa
agtggagtcaatcttgagaaacgtgttgctaagctgaagggggatgaaagggaagatctg
aaagttctggcaactggtgtagctgctgctttggcagcccgcaagagctcatggctatct
gaagaagagttcggcatgggtctccttgatcttaagcaagggccagcaaaaattgtgcct
ggaaatcaatcagcagatcctttgacagcaaaagatcagagtgttcgtgcaaaatccatt
gagggtaggcatgaacggtcagaagctgccatgaagcctgatgctcaacaaaagaaaaat
gccttggctgcaaatggatctgataaccaaatgccatcttcttctgcacaaggaaaagtt
tcagggattatacgaggttctgatgaacctcccaaacttctatctgatgagggagttaag
gtttcaaagcctactgcagaatctgagacaagggtgccccaaaagcgtgtggcacacaat
gctggcaaggtatctaagcatgatatggtaaaggaagatacaaaatctgggaaatctaca
aacagaggtgttactcaacaaggctcctctgttcctgttgataaagaagtattgtctcag
gcagctgatggtgtgcaagataccaccagtaattctttggctgctagcaatggtaactta
catacggctccacggaaggtatcagcatcctcccaaaaatcaacactgttggctacacat
actggtggagcagctaattcctctggtgaatctactgacttgattgactctaatatgaaa
cagcaaaagaggtttgttcctactgaagaacaagatagaggaactaaatggaggaaagga
gagagtgaaggccgggatggtgacttcacagaacacactgacaaggacagaaatttggac
tcgcgattggtagataaatttcgtcccatggatcatgacaagagtgctagcgaggaacaa
atcctaagtaggccagagaaatcaaaagaaaaggctgatgacaaatatgaccgggatcct
agagaaaaagcagatcgaactgagaggcgtcgaggggaagacatcgagagaccaacagac
aaatcattggaaaggagagagcgttctattgaaagaatgcaagaaagagggacagataga
gctcctgataaaggaagagaagacaggaataaggaggagagaaataaagttaagcatgct
gaaccatccatagatcgtgcacatccttctgatgaacggttccgaggacaaagcttgcca
ccacctccaccccttccagcaagttttgtaccccaatcagttggtaacaggagagatgaa
gataccgatcgaaggggtggtagtactaggcataaccaacgatcatctcctaggcgtgat
gataaagaaaagtggcacttggaggacaatgctgcgtcgttgcaggatgatggaaagcac
cggagagaggaagatattcgggacagaaagcgtgaagatagggatgtttcgtcaagcaag
gtagatgaccgggatagggacaaaagtagtattgtgaaggatgaaagtgatcctaatagt
gcttccaaacggcgaaagatcaagagagatcagtctggtttagaagctggggaatacgca
ccttctgctccacagcttcccagtcatggaaccagtagctcacaagtgtttgaaacacga
gagcgagaacgaaagggggcaatttcacagcatcggatatcccatgctgatgaccttcct
agaatacatggaaaggactcgagcaagacaagtcgtagagaggctgaccaagtacatgag
agagaatgggaagaggaaaagcgatcaagaacggaaactaaaaggaagcaccggaagtag
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integrated database retrieval system
