Oryza sativa japonica (Japanese rice) (RefSeq): 4349214
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Entry
4349214 CDS
T01015
Name
(RefSeq) lysine-specific histone demethylase 1 homolog 3
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
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Gene cluster
GFIT
Motif
Pfam:
Amino_oxidase
NAD_binding_8
SWIRM
DAO
FAD_oxidored
Pyr_redox_2
Thi4
HI0933_like
FAD_binding_3
FAD_binding_2
Pyr_redox_3
Pyr_redox
Lycopene_cycl
NAD_binding_9
MurD-like_N
GIDA
AlaDh_PNT_C
Shikimate_DH
NAD_binding_7
Trp_halogenase
Motif
Other DBs
NCBI-GeneID:
4349214
NCBI-ProteinID:
XP_015614418
UniProt:
Q336Y0
LinkDB
All DBs
Position
10:20680581..20689226
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AA seq
1832 aa
AA seq
DB search
MPDIRSAPGRGKSDEDERRPIGSLFKLKRKRRAPGSAEAKGDSNPSVESEAPDGVVPGEM
DDTLAIIKRKLRKPKKGKEGGDAVVVGSGAEGELLVEEEDVQGGVNVGDGVAEDKSNLEG
VKVEVDEVIGGELKDSGGLGLEDSLSTLFKRSGRKSRQVSVKEEEGVEVAGSHGEEILEK
GSGLVSDRVAKGTKRRRRRTKEEMKNAAAKSESAMAHEGSPNRKVGTSLPRKAKAEAKVK
ISNSNRRSKKSDEKPKASDDVLCHRSLGETIEQDAETRTVLDDGSRNSSDGASHRIEVSA
CLSNQPCLKPCSGELAEEVSLSAANAATDGVSNEHTYSETLLKERNDDAGCSHGKPPTLA
IKSIPGKKPIEMPKKPVRQKDQLLSTDVDNKCVVGSGDTKDVNIENQPAFGIPESHVTGK
GLHPHKMATSVKELDVVDVVAPTDFEDMENASKSKRVTRSSRKRKHGDMAYEGDIDWETL
MQEQGLFSNLSAALVDYPLKSKDKIKISEVLDNGDGSGVAAVRAGLKAKAVTPIEKIKFK
DILKRRGGLQEYLECRNMILSRWCKDVKHILDLAECGVSDVCLDDESPRQTLIRDVYLFL
DQNGYINAGIASDKVKTDHESPPEDVEVSKLNESHERKSVSIQDCIVTEAVQDKKAVVKQ
TDCVLTEASNEESSSAAIHCDAQDLLPPLKSEELIFKEKNQGVLTEGRDESALPSNSDIH
SKSDLDGFILKVEGGSLHQAEAADIEHSENKHEASDRVESGGYGKKIIVVGAGPAGLTAA
RHLQRQGFSVTVLEARNRIGGRVYTDRVSLSVPVDLGASIITGVEADIATERRADPSSLI
CSQLGLELTVLNSACPLYDVVTGDKVPDDLDTDLESEYNGLLDEMAQLFAQNGESAVGLS
LEDGLEYALRKNRVTRSEQDDQLRNVSSAGAVDISESASTEKEIAHCGKEDKTDVLSPLE
RRVMNWHFAHLEYGCAAMLKSVSLPYWNQDDVYGGFGGAHCMIKGGYDTVLESLAKGLDV
QLNHVVTEVLYGSEELGASGNSRKFVKISTSNGNEFVGDAVLITVPLGCLKAQTIKFSPS
LPDWKLSSIDRLGFGLLNKIVLEFPEVFWDDNVDYFGATAEQTDLRGQCFMFWNLKKTVG
VPVLIALLVGKAAIDGQSISSDDHVKNAIVVLRKLFKDASVPDPVASVVTNWGLDPFSRG
AYSYVAVGASGRDYDILGRPVSDCLFFAGEATCKEHPDTVGGAILSGLREAVRIIDLVHS
GKDYVAEVEALQTYQMQSDSERNEVKDMSNKLDACELSTALCKTSSDASYPLFSKETLLQ
EMFFSAKTTSGRLHLAKELLKLPPDVLKSFAGSKDGLSTLNSWILDSLGKNATQLLRHCV
RLLLLVSTDLLAVRLSGIGRTVKEKVCVHTSRDIRAIARQLVSVWVEVFRKEKASNGGLK
LLRRMPSTESSKPRSKDLLSGKPIVRAPNQVSFNPKVASKNARSAGNHSPHTAIKKPENK
AAKLEAMTATRSDGSSLRSQKQQHALEPKVDNGLAMSEEEAAAFAAAEAARAAAIAAAQA
YASVEAEINAPRELPKIPSFHTFAMRDHYLDESDTRKKVLSDNLVRLECISEIDSRNDKA
KNPSVDHANCADVDSSKMTGDNCTQRSYSNENACLINIRDHSTDSGAVDSRFTRAWVDTD
TIFIDGVKDPLAIERWQQQAMEADKEFYSRIRIPDEEDSSSQKQTCRSSASQVAESKPAS
DGQSRGVEHLRQGLINFISTVLMPLYRNKKVDREGYKGIMRKAVTKIIETCTEGEKMMTV
HEFLDSKRKNKIQTFVDKLVERHCHMNRPPNS
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacattaggtcagcccctgggcggggcaagtccgacgaggacgagcggcggccg
attgggtcgttgtttaaactcaagaggaagcgcagggcaccgggttcggcggaagccaag
ggggattcaaaccctagcgtggaatcggaggctcccgatggtgtggtgccaggggagatg
gatgataccttggctattataaagaggaaattgaggaagcctaagaagggcaaagaaggg
ggtgatgctgtggtggttggatctggagccgaaggcgagctcctggtggaggaagaagat
gtgcagggtggtgttaatgttggtgatggtgttgcagaggataagagcaatctggaaggt
gtgaaagtagaggttgatgaagtcattgggggtgagttgaaggattcaggtggtctaggg
ttggaggactccttgtcgacgctgtttaagagatctggtcgaaagtctcgacaggtctct
gtgaaggaggaagaaggtgtggaagttgctggttcacatggtgaggaaattcttgagaag
ggatctggtttggtttcggatagggttgccaagggcactaaacggagaaggcgacgcaca
aaggaagaaatgaaaaatgctgctgcaaaatctgaaagtgcaatggcccatgaaggatcg
cccaatcggaaagttggcacctccttgcctagaaaggcaaaggcagaggcaaaggtgaag
attagtaattccaataggcgctcaaagaagtctgatgagaaaccgaaggcttcagatgat
gtgttatgtcaccgatcattgggagaaacaattgaacaagacgcggagaccaggacagta
ctggatgatggatctagaaactcatctgatggggccagtcatcgcattgaagtttcagct
tgtttaagcaatcagccttgcttgaaaccttgctcaggagagcttgctgaagaagtgtct
cttagtgcagcaaatgcagccactgatggtgtttctaatgaacacacatattccgaaaca
ttattgaaggaaagaaatgatgatgcaggttgttcccatggcaagccaccgacattagcc
ataaaaagcatacctggtaaaaaaccaatagagatgcccaagaaacctgtccgacaaaag
gatcagttattatctactgatgttgacaataaatgcgtggtgggctcaggtgacactaaa
gatgtcaatatcgaaaatcagccagcttttgggatccctgagtcccatgtgactgggaag
ggcttgcatcctcataaaatggcaacatctgtgaaagagctggatgtagttgacgtggta
gcacccacagatttcgaggacatggagaatgcatcaaaatcaaagcgtgtgacacgtagc
tccagaaaacgcaagcatggtgacatggcatatgagggtgatattgactgggaaactcta
atgcaggagcaggggctgttctcaaacctctcagcagccttagtagattatcctctcaaa
tcaaaagacaaaatcaaaatctcggaagttctcgacaatggagatggtagcggtgttgct
gcagtgcgtgctggcctaaaggcaaaggctgttactccaattgaaaagataaaattcaag
gacatattgaagcgcaggggtggccttcaggaatacctggaatgcaggaacatgattcta
agtcgatggtgcaaggatgttaaacatatattggatcttgcagagtgtggtgtatctgat
gtttgtttggatgacgagtcaccacgtcaaacacttatacgtgacgtgtatttattctta
gatcaaaatggttacataaatgccggaatcgcctcagataaggtgaaaacagaccatgaa
agtcctcctgaagatgtagaagtatccaagctaaatgaatcacatgaaaggaaatctgtc
agtattcaagattgcattgtcactgaagcagtccaggataagaaagctgttgttaaacag
actgattgcgttttgacagaagcatcaaatgaagagagtagctctgctgccattcactgt
gatgctcaagacttgctgcctcccttgaagtccgaagagctgatattcaaggaaaagaat
cagggtgtattaactgaaggtagagatgaatcagcacttcccagcaattccgatatccac
tctaagtctgaccttgatggtttcattttaaaagttgaaggtggcagtcttcatcaagca
gaagcagctgatatagaacattctgaaaacaaacatgaagcaagtgatagagttgaatct
ggtgggtatggaaaaaagataatagttgttggggctggtccagctggcttaactgctgca
cgacatttgcagcgccaaggtttttctgtcactgttcttgaggcacgtaataggattggc
ggtcgtgtttatacagatcgtgtgtctctttcagttcctgtggatttgggtgctagcatt
attacaggtgtggaggctgatatagcaacagaaagaagggctgatccatcatctttgata
tgttctcagcttggtcttgaactgactgtgttgaacagtgcttgccctctctatgatgta
gtaactggcgacaaagttcctgatgatttggatacagatttggaatctgaatacaatggt
cttcttgatgagatggcacagctttttgcacaaaatggtgaaagtgcagtgggtttatcc
cttgaggacggattagagtatgcacttaggaagaatcgtgtgactcgatctgaacaggat
gatcagttaagaaatgtatctagtgctggagctgtagacatttctgaaagtgcttccaca
gaaaaggagatagcccactgtggaaaggaggataagacagatgttctcagcccccttgaa
agaagagttatgaactggcactttgcacatttggaatatggttgtgctgcaatgctcaaa
tccgtttctcttccatattggaaccaggatgatgtgtatggagggtttggaggagctcat
tgcatgattaaaggtggctacgacacagttctagagagccttgcaaaaggacttgatgtt
cagttaaatcatgttgtaactgaagtactttatggatctgaggaactaggtgccagtggt
aatagcaggaaatttgtcaaaatttccacttcaaatggaaatgaatttgtgggagatgct
gtgctgatcactgttcctcttggttgcttgaaagcacagacaattaaattttctccttcg
ttgccagactggaaattgtcttctattgacaggcttggatttggtcttctcaataaaatt
gtcttggagtttcctgaggtcttttgggatgataatgtggattattttggtgcaactgct
gaacaaactgatttaagaggacaatgctttatgttttggaatctcaaaaagacagttggg
gtaccagttctgatagcactacttgttgggaaggctgctatagatggacagagtatcagt
tctgatgatcatgttaagaatgctatagtggttctccgtaagctctttaaggatgcttct
gtaccagatccagttgcatctgttgtgacaaactggggacttgatccttttagcagagga
gcttactcttatgttgcagtaggagcatcgggaagggactacgacattctaggaaggcct
gtttcagactgtttattttttgctggtgaagcaacatgtaaagaacacccagatactgtt
ggtggtgcaattttaagtggtcttcgagaagctgttcggatcattgacttggtacacagt
ggtaaggattatgtggctgaggttgaagctctacaaacttaccaaatgcagtcagatagt
gaaagaaatgaagttaaagacatgtcaaataaacttgatgcatgtgaactttcaactgct
ctgtgcaaaacctcatctgatgcatcctatccactatttagcaaggagactttactgcaa
gaaatgttctttagtgcaaaaacaacatcagggcgtctacatttggctaaagagttattg
aagcttcctccagatgttctgaaatcatttgccgggtctaaagacggactatctacgctg
aactcatggatacttgattctcttgggaaaaatgctactcaactgttgcgacattgtgta
cgcttgcttctgcttgtttcaaccgacctgctagctgttcgcttgtctggaattgggaga
actgtaaaggaaaaggtttgtgtccatacaagtcgagatatacgtgctatagctcgtcag
ttggttagtgtgtgggtagaagttttccgtaaagaaaaggctagcaatggtggactcaaa
ttgctgcgtcgcatgccatcaactgaatccagtaagcccaggagtaaggatctactgtca
ggaaagcctattgtacgtgcgccaaatcaagtttcatttaaccctaaagttgcttcaaag
aatgcaagatctgctggaaaccattcaccacacacagcaatcaagaagcctgagaacaag
gctgcaaaactggaggctatgacggctaccaggtctgatggtagttcgcttcgttcccaa
aagcaacaacatgctctagaacctaaagttgataatggcctagctatgtctgaagaagaa
gctgctgcatttgctgctgccgaggctgctcgagctgctgccatagcagctgcacaggcg
tatgcatctgtagaggcagagataaatgcacctcgtgaacttccaaagataccatcattc
catacttttgcaatgcgtgaccattatttggatgagtctgatacaagaaagaaggtgtta
agtgacaaccttgtgagacttgagtgcatatcagaaattgattccaggaatgacaaagct
aagaacccatcagttgaccatgccaattgtgccgatgttgacagctcaaaaatgactggt
gataactgtactcagaggagctactcaaatgagaatgcctgcctaataaatattagggat
cattctacagatagtggagccgtagacagtcggttcacaagggcatgggttgatacagat
acaatcttcattgatggtgtcaaggatcctctagccattgagaggtggcaacaacaggca
atggaagcagataaagaattctacagtcggatacgtatacctgatgaagaagactcaagt
agccaaaagcagacatgtaggagttctgcctcacaggttgcagaaagcaaacctgcatca
gatgggcaatcacgaggtgtagaacatttaaggcagggtcttataaatttcatatccaca
gtactgatgccactatacagaaacaaaaaggttgacagggaggggtacaagggaataatg
cggaaagctgtcaccaagatcattgagacatgcacagaaggagagaagatgatgactgtt
catgagtttcttgattcgaaaaggaaaaataagattcaaactttcgtggataagttggtt
gagaggcattgccatatgaatcggcctcccaattcataa
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integrated database retrieval system