Oryza sativa japonica (Japanese rice) (RefSeq): 4350906
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Entry
4350906 CDS
T01015
Name
(RefSeq) serine--tRNA ligase, chloroplastic/mitochondrial
KO
K01875
seryl-tRNA synthetase [EC:
6.1.1.11
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
4350906
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
osa01007
]
4350906
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
osa03016
]
4350906
Enzymes [BR:
osa01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.11 serine---tRNA ligase
4350906
Amino acid related enzymes [BR:
osa01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
4350906
Transfer RNA biogenesis [BR:
osa03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
4350906
Prokaryotic type
4350906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2b
Seryl_tRNA_N
DUF244
Motif
Other DBs
NCBI-GeneID:
4350906
NCBI-ProteinID:
XP_015615389
UniProt:
Q2R1C1
Q0IRN7
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All DBs
Position
11:23628177..23632509
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AA seq
509 aa
AA seq
DB search
MLTCGRFLSSSAAASTPSLSPFRNLTLSLLRRPHLRLLSSSATASAAAAAVEPDTKGGAG
GGAAKPQWKAAIDFKWIRENTDAVAANIRDRNSAANLDLVLQLYDEYLALQKEVERLRAE
RNAVANKMKGKLEPSVRQALVEEGKNLKEGLIALEEDLVQLTDKLQLEAQSIPNTTHPDA
PVGGEESSVVRKEVGSQRNFNFTIRDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLL
EMALVNWAITEVSKKGFTPLITPEIVRSSVVEKCGFQPRAQNTQVYSIDNSDQCLIGTAE
IPVGGIHMDSILPDSDLPRKYVAYSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVFCRPE
ESDKCHEELITIEEELYASLGLHFKTLDMATGDLGAPAYRKFDIEAWMPGLDRYGEISSA
SNCTDYQSRRLGIRFRPSPADPPPANAKKGKGSSGPTQFVHTLNATAVAVPRLIICILEN
FQQEDGTVVIPEPLRPFMGGLEVLSPKTK
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgctgacctgcggccgcttcctctcctcctccgccgccgcctccaccccctccctctcc
cccttccggaacctaaccctctccctcctccgccgtccccatctccgcctcctctcctcc
tccgccaccgcctccgccgccgccgccgccgtcgagcccgacaccaagggtggcgcgggt
ggcggcgccgcgaagccgcagtggaaggcggcgatagacttcaagtggatccgggagaac
acggacgccgtcgccgccaacatccgcgaccgcaactccgccgccaacctcgacctcgtc
ctccagctctacgacgagtacctcgccttgcagaaggaagttgaacggctccgagctgaa
agaaatgcagttgctaataagatgaaagggaaattagaaccatctgtgcgtcaagccctt
gttgaagaaggcaagaacctgaaagaagggcttattgccctagaagaggaccttgttcag
ctgactgataagcttcaactagaagcacaaagcattcctaacaccacacatccagatgct
cctgtagggggtgaggaaagttctgtcgtcagaaaagaggttggtagtcagagaaacttc
aatttcaccattagagatcaccttcagctgggaaaagaacttgatttgtttgattttgat
gcagctgctgaggttagtggctcgaagttctactacttaaagaatgaagctgttctgttg
gagatggcccttgttaattgggccatcactgaggtctcaaagaaaggtttcacaccacta
ataactccggagattgtaaggtcatctgttgttgagaaatgtggcttccagccaagggcc
caaaatactcaggtttattcgatcgataacagtgatcagtgcctcataggaactgcagag
attcctgttggcggcatccatatggactctatactccctgattctgatttgcctcgaaaa
tatgtagcctattcacattgttttcgcacagaagctggtgccgcaggtgctgccactagg
ggcctctaccgtgtacatcagtttagcaaggttgagatgtttgtattttgccggccagag
gagagcgacaagtgccatgaagaacttatcactattgaagaggaactttatgcatcactt
ggacttcatttcaaaactttggatatggcgactggggatctgggagcaccggcctacaga
aagtttgacattgaggcatggatgccaggcctagataggtacggtgagatctcgagcgcg
tcaaactgcacagactatcagagcaggcggctgggcatccggtttcgcccatcacctgca
gatcctccaccggcgaacgccaagaaaggaaagggcagctcaggcccaacacagtttgtc
cacacgctcaacgcgacagcggttgctgttcctcgcttgatcatatgcatcctggagaac
tttcagcaagaagatggaacggttgtgatcccagagccactgaggcccttcatgggcgga
cttgaagtgctctccccgaaaaccaaatga
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