Cutibacterium acnes HL096PA1: PAGK_1231
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Entry
PAGK_1231 CDS
T02638
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pach
Cutibacterium acnes HL096PA1
Pathway
pach03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pach00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAGK_1231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pach03019
]
PAGK_1231
03400 DNA repair and recombination proteins [BR:
pach03400
]
PAGK_1231
Enzymes [BR:
pach01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PAGK_1231
Messenger RNA biogenesis [BR:
pach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAGK_1231
DNA repair and recombination proteins [BR:
pach03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PAGK_1231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AGJ80068
LinkDB
All DBs
Position
1371479..1373629
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AA seq
716 aa
AA seq
DB search
MTTTTDAIPKVDDLRTQGVAILRRLVGRNNADFHPGQWEAIEALVAHHRRALVVQRTGWG
KSAVYFVATLLQRAIGSGPTLIVSPLIALMRDQVAAAKRAGVRAAAISSANATEWSEIAQ
RLDADELDVLLVSPERLVNPTFASRQLPELIKRMGMLVIDEAHCISDWGHDFRPDYRRIR
NLVSALPVTIPVLATTATANSRVVQDVAEQIAPSADDVFILRGPLARKSLRLGVLNLPNP
SERLGWLVQHLSELPKSGIIYCLTVSTAEDTARALTTAGHNVRAYTGRTDAEARTELEKA
LRNNQVKALVATSALGMGFDKPDLGFVVHLGAPSSPIAYYQQVGRAGRATDNADILLLPG
PEDPDIWTYFATSSMPTQERADAVLRALAGGQALSISALETRVDIRRSQLELLLKVMAVD
GSVVKVRDGWQATGKPWVHDTERYERISQARREEQQAMLGYERSRTCRMTLLTGQLDDPS
TTPCGRCDVCAGPWYSVEVDQSAAVRAVQSLNRVGVPVEPRTAWPVGMDALQVALKGRIS
AEEIAAEGRVIARLSDLGWGGALRDLLRSDTNGVPIDAEITPALAKACLRVLAEWDWEQR
PAAIVRIPSITRPHLIDSLASGIARVGHLQDLGWLDLADGSARLQSSTNSAYRLRDVHDR
FSVGPGLMSRLSHLGGASVLLIDDVISSRWTMTVAARSLRRAGSGPVLPLALALTA
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaactaccgacgcaataccgaaagtagatgacctacgcacccaaggggtggca
atccttcgtcgtctcgtcggtcgcaacaatgccgatttccaccctggacagtgggaggcc
atagaggctctggttgcccaccaccgtcgagcgctcgtagtccagcgcaccggttgggga
aagtcagcggtttactttgtcgctaccttgttacagcgtgccatcggctcaggcccgacc
ctcatcgtctctccacttatcgccctcatgcgcgaccaggtcgctgccgcaaagcgagct
ggcgtgcgcgcagcggccatctcatcggccaatgccaccgagtggtccgaaatcgcccaa
cgcctcgacgccgacgaactcgacgttctattagtctcccccgaacgcctggtcaatccc
acattcgccagtaggcagctgcccgagctcataaagcgaatgggcatgttggtcatcgac
gaagcccactgcatctctgactgggggcacgattttcgccccgattaccgacgcatccgt
aacctcgtctctgccctaccggttacgatcccagtacttgcgacaacggcgaccgcaaac
tcacgtgtggtccaagatgtggccgagcagattgcccccagcgccgatgatgtgttcatc
cttcgtgggccgttagcccggaaatctctgcgactcggcgtactcaatctgcccaaccct
tccgaacggctcggttggctcgtccagcacctcagtgaacttcccaagtcgggaattatc
tactgcctgactgtttcgacggccgaggacaccgcgcgtgctctaaccacggccggtcac
aatgtgcgggcttacaccggacgcaccgatgccgaagcaaggaccgaactcgagaaagcc
ctgcgcaataaccaggtcaaggccttagtggcgaccagtgccctgggcatgggtttcgac
aaaccggacctcggcttcgtcgtgcacttgggtgcgccgagctctccgatcgcgtactac
cagcaggtaggccgtgccggtcgcgccaccgacaatgccgatatcctgttgcttccgggc
ccggaggatcctgacatttggacttacttcgctacctcctctatgcccacccaagaacga
gccgatgccgtgctcagagcactcgcaggtggtcaggcgctctctatctcagctctggag
acgcgggtcgacatcaggcgtagccagttagagctattgcttaaagtgatggccgttgat
ggctcggtcgtgaaggtccgagatgggtggcaagccaccggcaagccgtgggtgcacgac
accgaacggtacgaacgcatctcccaggcacgtcgcgaggaacagcaggccatgctcggc
tacgagcgctcaagaacctgtcgcatgaccttgctcaccgggcagctggacgacccctcc
acgactccttgcggacgctgcgacgtctgtgctggcccgtggtactcagtcgaggtcgat
cagtcagccgctgtgagagccgtccaatccctcaaccgggtgggagttccggtggaacca
cgcaccgcctggcccgtggggatggatgccctccaggttgcgctcaagggtcgcatcagt
gccgaggagatcgctgcagagggccgcgtcatcgcgagactctccgatctgggttgggga
ggggcgctgcgcgacctacttcgctccgacaccaatggtgtccctatcgacgctgagatc
accccggcgttggccaaggcgtgcttgcgagtgttggccgagtgggactgggagcagcgt
ccagccgcgatagtacggatcccgtcgatcactcgcccacacctcattgattccctggcc
tcgggaattgcacgggttggccacctgcaagaccttgggtggttggacctggcggatggg
tccgcacgactacagtcatccacgaactcggcttaccggctccgtgatgtccatgatcgg
ttcagcgtcggaccggggctgatgtctcggttatcccatcttggcggggcatcggttctg
cttatcgatgacgtcatctctagccgctggacgatgacggtcgctgcacggtcgttgaga
cgagccggatccgggcccgttcttccactagccctcgccctcacagcctga
DBGET
integrated database retrieval system
