Pseudomonas aeruginosa PA1R: PA1R_gp4087
Help
Entry
PA1R_gp4087 CDS
T02929
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
paer
Pseudomonas aeruginosa PA1R
Pathway
paer02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
paer00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PA1R_gp4087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paer03021
]
PA1R_gp4087
Transcription machinery [BR:
paer03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PA1R_gp4087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Sos7
Motif
Other DBs
NCBI-ProteinID:
AHA25804
LinkDB
All DBs
Position
complement(4551682..4553535)
Genome browser
AA seq
617 aa
AA seq
DB search
MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFET
APDADALLLAEADTDEAAAEEAAAALAAVESDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAQFPGTVDSILADYNRIVAEGGRLSDVLSGYIDPDDGSLPAEEV
EPVNLKDDSADSKEKDDEEEESDDSSDSDDEGDGGPDPEEARLRFTAVSEQLDKAKKALK
KHGRGSKQATAELTGLAELFMPIKLVPKQFDALVARVRSALEGVRAQERAIMQLCVRDAR
MPRADFLRLFPNHETDEKWVDSVLKSKPKYAEAIERLRDDILRNQQKLAALESEVELTVA
EIKEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMAT
SESLKESTREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEHLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatctcgtctgaaagagttgatcgcccgaggccgtgag
cagggatacctgacttacgcggaggtcaacgaccacctgccggaggatatttccgatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagaca
gccccggatgcggatgccctgttgctggccgaggcggataccgacgaagccgcagcggaa
gaagccgcagcggccctggccgcggtggaaagcgacatcggtcgcaccaccgacccggtg
cgcatgtacatgcgtgaaatgggtaccgtggaactgctgacccgcgaaggcgagatcgaa
atcgccaagcgcatcgaggaaggcatccgcgaagtgatgagcgccatcgcccagttcccg
ggcacggtggacagcatcctggccgactacaatcgcatcgtcgccgaaggcggtcgcctc
tccgatgtcctcagcggctatatcgatcccgatgacggcagcctgcccgccgaagaggtg
gagccggtcaacctgaaggacgattccgccgactcgaaagagaaggacgacgaggaagaa
gaaagcgacgacagcagcgacagcgacgacgaaggcgacggcggtccggatccggaagaa
gcccgcctgcgtttcaccgcggtctccgagcagctcgacaaggccaagaaggccctgaag
aagcacggtcgcggcagcaagcaggccaccgccgaactcaccggcctggccgagctgttc
atgccgatcaagctggtgcccaagcagttcgacgccctggtcgcccgcgtgcgctccgcc
ctggaaggcgtgcgcgcccaggaacgcgccatcatgcagctctgcgtgcgtgacgcgcgc
atgccgcgtgccgacttcctgcgcctgttcccgaaccacgagaccgacgagaagtgggtc
gacagcgtcctgaagagcaagccgaagtacgccgaggccatcgagcgcctgcgcgacgac
atcctgcgcaaccagcagaagctggcggccctggaaagcgaggtcgagctgaccgtcgcc
gagatcaaggaaatcaaccgcgcgatgtcgatcggcgaagccaaggctcgccgggcgaag
aaggaaatggtcgaggccaacctgcgcctggtgatttccatcgccaagaagtacaccaac
cgcggcctgcaattcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtg
gacaagttcgaataccgtcgcggctacaagttctccacctacgccacctggtggattcgc
caggcgatcacccgttcgatcgccgaccaggcacgcaccatccgcatcccggtgcacatg
atcgagacgatcaacaagctcaaccgcatctcccgccagatgctccaggaaatgggtcgc
gagcccaccccggaagagcttggcgagcgcatggacatgcctgaggacaagatccgcaag
gtactgaagatcgccaaagagccgatctccatggaaaccccgatcggtgacgacgaagat
tcgcacctgggcgatttcatcgaggactccaccatgcagtcgccgatcgagatggcgacc
agcgagagcctcaaggaatccacccgcgaagtcctcgccggcctcactgcccgggaagcc
aaggtgctgcgcatgcgcttcggcatcgacatgaacaccgaccacaccctcgaggaagtc
ggcaagcagttcgatgtgacccgcgagcggatccgccagatcgaagccaaggcgttgcgc
aagctgcgccatccgtcgcgaagcgagcacctgcgctccttcctcgacgagtga
DBGET
integrated database retrieval system
