Pantoea agglomerans C410P1: BEE12_09080
Help
Entry
BEE12_09080 CDS
T04739
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pagc
Pantoea agglomerans C410P1
Pathway
pagc02020
Two-component system
pagc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pagc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BEE12_09080
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BEE12_09080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pagc03021
]
BEE12_09080
Transcription machinery [BR:
pagc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BEE12_09080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AOE39995
LinkDB
All DBs
Position
complement(2005316..2006749)
Genome browser
AA seq
477 aa
AA seq
DB search
MKQGLQLRFSQQLAMTPQLQQAIRLLQLSTLELQQELQLALESNPLLEQTDLHEEIDSRE
SSEAEALDTREALEQKEMPDELPLDATWDEIYTAGTPSGTGTDYQDDELPVYQGETTQSL
QDYLMWQVGLTPFSDTDRAIATSIVDAIDDTGYLTVSLEEILDSIGDDELEADEVEAVLK
RIQRFDPIGVGARDLRDCLLVQLSQYAPETPMLAEARLIVSEHLDLLANHDFRSLMRVTR
LKEEVLKEAMLLIQSLDPRPGQSINTGEPEYVIPDVLVRKVGSRWTVELNADSVPRLKIN
QHYAAMSGATRNDSDSQFIRSNLQEARWLIKSLESRNDTLLKVTRCIVEQQQAFFEQGEE
FMRPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLISAENPAKPLSDSKLTSMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttacaactcaggttcagccaacagctggcaatgactccgcaattgcaa
caggcgattcgcctgctgcaactctctacgcttgaactccagcaggaacttcagcttgcg
ctggaaagtaatccgctgcttgagcagactgacctgcatgaagagatcgattcacgggag
tcttcagaggccgaggcgctggatacacgcgaagcgcttgagcagaaagagatgcctgat
gaactgccgctggatgcgacctgggatgagatctacaccgcgggcacgccttccggcacc
ggcaccgattaccaggatgatgagttaccggtttatcagggcgagacgacccagtcactg
caggattatctgatgtggcaggtcggactgacgccgttcagcgataccgatcgcgccatt
gccacctctattgtcgatgctattgatgacaccggatatctcaccgtttcgcttgaagag
atccttgacagcatcggcgatgatgagctcgaagcggatgaagttgaagcggtgctgaaa
cgcatccagcgctttgacccgattggtgtcggcgcgcgcgaccttcgtgactgcctgctg
gtgcagctttcacaatatgcgcccgaaacgccgatgctggcagaggcgcgcctgatcgtc
agcgaacatctcgatctgctggcaaaccacgacttccgcagcctgatgcgggtcacacgc
ctcaaagaagaggtgctgaaagaggcgatgctgctgattcagtcgctggacccgcgtccg
ggtcagtcgatcaacaccggcgaaccagaatatgtcattcccgatgtgctggtacgtaaa
gtcggcagccgctggacggttgaactcaatgccgatagcgtgccacgcctgaagatcaat
cagcactatgcggcaatgagcggcgcgacgcggaacgacagcgacagccagttcattcgc
agtaatctgcaggaagcccgctggctgattaagagcctggaaagccgcaatgataccctg
ctgaaagtgacgcgctgtattgttgagcagcagcaggcctttttcgagcagggtgaagaa
tttatgcgcccgatggtgctggcggatattgcccaggccgttgagatgcacgaatcgacc
atctcccgcgttaccacgcagaagtatctgcacagcccacgaggcatttttgaactgaag
tactttttctccagtcacgttaatacggaaggtggcggtgaagcctcctctaccgcgatt
cgtgccctggtgaaaaaattaatttcggcggaaaatccagccaaacccttgagcgacagt
aaactgacctccatgttatctgatcaggggatcatggtggcacggcgcaccgtcgccaaa
tatcgtgagtctttatccatcccgccatcgaaccagcgtaaacaactggtttga
DBGET
integrated database retrieval system
