Paraburkholderia aromaticivorans: CJU94_17060
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Entry
CJU94_17060 CDS
T05169
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
parb
Paraburkholderia aromaticivorans
Pathway
parb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
parb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CJU94_17060 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parb03400
]
CJU94_17060 (recB)
Enzymes [BR:
parb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CJU94_17060 (recB)
DNA repair and recombination proteins [BR:
parb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CJU94_17060 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
Herpes_TK
DUF374
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ASV99701
UniProt:
A0A248VMF2
LinkDB
All DBs
Position
1:complement(3773046..3776738)
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AA seq
1230 aa
AA seq
DB search
MSGGKRSYALVAEELDVFACSLDGVNQIEASAGTGKTWNICALYVRLLLEKNLNADQILV
VTFTKAATAELHERIRGRLAELDRAIEMDDDGGDPFIRRLFETTLAPERGIEREAALKVV
RRALRTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDAALRFEMAADFWREQVEP
EAYAHPAFAAWLVARRAGPASLDEQLARRLKKPLAQLRWGKLDASGQGVDQQAGFEAACD
LWHAERDRIVGLLAEAQDRLSRTSHKPDHVSAAIAAWTEYFAQGDCHAPPPKAALKLTAS
ALKKATKVKFEPPEHPFFEHAEALAAAVVAAEAAQRARWLSLVQAWLDYAPAELVARKRT
RRVVSFDDLLSNLYRALAAHPWLADALRTRYPAALIDEFQDTDPLQFAIFSRIFAPAGPL
FLVGDPKQAIYSFRAADLHTYLTAREAASACYTLAVNQRSTAPIVEACNRLFEANRQAFV
LDGLDYQPVRAGERRRPPFSDPHASAGDFRIWTLPQGDAALTKREAQREASEACATEIVR
LLRGAREGVVTIGDAPLAPGNIAVLVQTHKQGSLIKRVLAAWGVGSVELAQTSAFATLDA
EQIERVLAAVDTPGDLRRLRAALATDWLGLDAAALWRLEQVAEAPSSADDPAHAADAMGW
VERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAGPDGERRLTNVNHLAELVQARAATQ
PGIAPTLRWLAAQRTQGGGEDAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGALR
EPPSSGLPDAREYHDDTGAAVLHYGCDDEEAEHASRYAVREQAAERARLVYVALTRAVYR
CYLVAGTYLSSRSTKESRRSVLNWLVGGGGHGFEDWLAEPPDEAALAASWQALAGGPITL
QALPKPERRVPLESLQDRSAHMQARANRRPLRDQWRMASFSGLIAAGSQAEEARTAVEEV
RPDHDELADALVVTPAPVPQAQAYAEDDILAFPRGAAAGDCLHRMFELADFAGPHTWADA
IRGALRERPAPAVPELAARLPAMMHNLLRDVVTTELQPGMALANLNPRRRLNELEFLFAA
PSLDFPALRELLIEHGYPDVALEPGVLRGFVKGFIDMIVEYDGRFWIVDWKSNHLGDTAA
DYAAAPLEAAMASHAYHLQALLYTVALHRYLKTRVRDYSYDTHIGGYLYLFVRGVRPHWR
DADGPAGVHRRRPAFELVALLDAAMIGGVA
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggggcaaacggagttacgcgctggttgccgaagaactcgacgtcttcgcctgt
tcgctcgacggcgtgaatcagatcgaggcttcggccggcaccggcaagacctggaatatc
tgcgcgctgtacgtgcggctgctgctcgaaaagaacctgaacgcggaccagattctcgtc
gtcaccttcacgaaggcggcgaccgcggaactgcatgagcgcattcgcggccgtctcgcc
gaactggaccgcgcgatcgaaatggatgacgacggcggcgatccgttcatccgccgtctc
ttcgaaaccacgctggcgccggagcggggcatcgagcgcgaggccgccttgaaggtggtg
cggcgcgcgctgcgcaccttcgaccaggcggcgatccacaccatccacgcattctgtcag
cgtgcgttgcaggaggcgccattcgccgccgccatgccgttcgccttcgaaatggaagcg
gacgacgcggccttgcgcttcgaaatggcggcggacttctggcgcgagcaggtggagccc
gaagcgtatgcgcaccctgcgttcgccgcgtggctggtggccagacgcgccggcccggca
tcactggacgagcaactcgcgcggcgtctgaaaaaacctttggcgcagttgcgctggggc
aagctcgacgcaagcggccagggcgtcgatcagcaggccggtttcgaagccgcctgcgac
ctctggcatgcggagcgcgacaggatcgtcggtttgctggccgaggcgcaagaccgtctg
agcaggacctcgcataagcccgatcatgtgagcgcggccatcgccgcatggaccgagtat
ttcgcgcagggcgactgccatgcgccgccgccgaaagccgcattgaagctgacggcttca
gccttgaaaaaagccaccaaggtcaagttcgagccgcctgagcatccgttcttcgagcac
gccgaagcgctggcggcggccgtggtcgcggccgaagccgcgcaacgcgcgcgctggctc
tcgctcgtgcaggcctggctcgactacgcacccgccgaactggtggcgcgcaagcgcacc
cgccgggtcgtgtcgttcgacgatctgctgtccaacctgtatcgcgcgctcgccgcgcac
ccctggcttgccgatgctttgcgcacgcgttatcccgcagcgctgatcgacgaatttcag
gacaccgatccgctgcagttcgcgatcttcagccgcatcttcgcgccggccggtccgctc
tttctggtcggcgatccgaagcaggcaatctacagttttcgcgcggcggatctgcatacc
tacctgaccgcgcgcgaggcggcatccgcgtgttacacgctggccgtcaatcagcgctcg
accgcgccgatcgtcgaggcatgcaaccggctcttcgaagccaaccgccaggcgttcgtg
ctggatggtctcgactatcagccggtgcgtgcgggcgaacggcgcaggccgccgttctcc
gatccgcacgcgagcgccggcgacttccgtatctggaccttgccgcagggcgacgccgca
ttgaccaagcgcgaggctcagcgcgaagcgagcgaagcgtgcgccaccgagatcgtgcgt
ctgttgcgcggcgcgcgcgaaggtgtggtcacgatcggcgacgcgccgctggcgccgggc
aacatcgcggtgctggtgcaaacacacaagcagggcagtctgatcaaacgggtgctggcc
gcgtggggtgtcggcagcgtggagctggcgcagacgtcggcgttcgcgacgctcgacgcc
gagcagatcgagcgcgtgctggccgcggtcgatacgccgggcgatctgcgccgtttgcgc
gccgcgctggcaaccgactggctgggtctcgacgccgcggcgctgtggcgcctcgagcag
gtcgccgaggcgccgtcatccgccgacgatcccgcgcacgccgctgacgcgatgggttgg
gtcgagcgtttttcccgttatcgcacgctgtggcatgagcgcggcttcgcggtgatgtgg
cgcacgctgatgcgtgagttgcgcgtcgcgcaacggctggttgcgggaccggacggcgag
cgtcgtctgacgaacgtgaatcatctggccgaactcgtgcaggcgcgcgccgcgacgcaa
ccgggcatcgcgccgaccttgcgctggctcgccgcgcaacgcacccagggcggtggcgaa
gacgcgcagttgcggctcgagtccgatcgcaacctggtgcagatcgtcacggtccataaa
tcgaaagggctcgaatacgcggtggtgttctgcccgttcctgaacgacggcgcgttgcgt
gagccgccatcatccggcttgccggatgcgcgcgagtatcacgacgacacaggcgccgcg
gtgctgcactacggttgcgacgacgaggaggccgagcatgcgtcgcgttacgcggtgcgc
gagcaggcggccgagagggcgcggctcgtctacgtggcgttgacgcgcgcggtgtaccgc
tgctatctggtcgccggcacgtatctgtcgtcgcgctccacgaaggagtcgcggcgcagc
gtgttgaactggctggtgggcggtggtggccacggtttcgaggactggctcgccgagccg
cccgacgaagccgcgttggcggcgagctggcaagcgctggcgggcggcccgatcacgctg
caggcgctgccgaagcccgagcgccgcgtgccgctggaaagcctccaggaccgcagcgcg
catatgcaggcgcgggccaatcgcaggccgctgcgcgatcagtggcgcatggcgagtttc
agcggcctgatcgccgccggcagtcaagccgaggaagcgcgcacagcggtggaagaggtg
cgaccggatcacgacgagcttgccgatgcgctcgtcgtcacgcccgcgcccgtgccgcag
gctcaagcctatgcggaagacgacatcctcgcgtttccgcgaggcgcggcggcgggcgac
tgtctgcatcgcatgttcgaactcgcagacttcgccgggccgcatacatgggccgatgcc
attcgcggtgcgttgcgcgagcgccccgcgccggctgtgcccgaactcgccgcacgcctg
cccgcgatgatgcacaacctgctcagggacgtggtcaccaccgagctgcagcccggcatg
gcgctcgcgaatctgaatccgcgccggcgcctgaacgagctcgagtttctgttcgcggcg
ccgtcgctggattttcccgcgttgcgcgagctgctgatcgaacacggctatcccgacgtc
gcactggaacccggcgtgttgcgcgggttcgtcaaaggatttatcgacatgatcgtcgag
tacgacgggcgtttctggattgtcgactggaagtcgaaccatctgggcgacacggccgcc
gactatgccgccgcgccgctcgaagcggccatggcgagccacgcctatcacctgcaggcg
ctgctctatacggtcgcgctgcatcggtatctgaaaacacgggtgcgtgattattcgtac
gacacgcatatcggcggctatctgtatctgttcgtgcgcggcgttcgtccgcattggcgt
gacgccgatggaccggcgggcgtgcataggcggcggcccgcgttcgaactggtcgcgctg
ctcgatgcggccatgatcggaggtgtcgcatga
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