Pyrobaculum arsenaticum: Pars_0172
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Entry
Pars_0172 CDS
T00503
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pas
Pyrobaculum arsenaticum
Brite
KEGG Orthology (KO) [BR:
pas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pas03016
]
Pars_0172
Enzymes [BR:
pas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pars_0172
Transfer RNA biogenesis [BR:
pas03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pars_0172
Prokaryotic type
tRNA splicing ligases
Pars_0172
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF5617
RuvA_N
Motif
Other DBs
NCBI-ProteinID:
ABP49787
UniProt:
A4WHC0
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All DBs
Position
156272..157768
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AA seq
498 aa
AA seq
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MCLVKVLNTKMWAHMRNIPINRVSDYIWEIPAGVKPCQKVPVRIYADSVLLEKMKTDMTL
EQGINVGCLPGIYKWSIVLPDAHQGYGFPIGGVAAIDAEEGVISPGGIGYDINCGVRVLR
TNLTEQEVRPKLKELVDTIFRLVPPGVGGTGHLRLSPGEFERVLAEGVEWAVQKGYGWAE
DMEYIEERGSWKLADPSKVSEKAKARGRDQLGTLGSGNHFLEIQVVDKIYDEKVAKLFGI
EREGQVVVMIHTGSRGFGHQVATDYLLIMERKMRQWGLNLPDRELAAAPLKDKVAEDYIK
AMASAANFAWTNRHIIMHWVREAFKKVFGSIEKVGLEIVYDVAHNIAKLEEHVVDEKGTV
KKVWVHRKGATRAFPPGRPEIPAKYREVGQPVLIPGSMGTASWILVGTHDSMRLTFGTAP
HGAGRVLSREAAIRMYPPHKVQEEMSKRGIIVRSAETEVISEEAPWAYKDVDRVVEAAHQ
VGFARKVVRQRPIGVVKG
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
gtgtgcctggttaaagttttaaatacaaaaatgtgggcacatatgcgtaacattcctatc
aacagggtatctgactacatctgggaaatcccagccggagtaaagccttgtcagaaggtg
cccgtgaggatctacgcagactccgtactgctggagaaaatgaaaactgacatgacccta
gagcagggcatcaacgtcgggtgtcttcccggcatttataagtggtcaattgtgctcccc
gacgcgcaccagggctacggctttcccattggaggtgtcgccgccattgacgccgaggag
ggcgtaatcagccctgggggcatcggctacgacatcaactgcggtgtgagggtgcttagg
acaaacctcacggagcaggaggttaggccaaagcttaaggagctggtggacacgatcttc
cgcctcgtgccgcccggggttggaggaaccggccatctgaggctatcgcctggcgagttc
gaacgtgttttggcggagggggtggagtgggcggtgcagaagggctacggctgggctgag
gacatggagtacatagaggagagggggtcttggaagctggccgacccgtctaaggtctcg
gagaaggccaaggcgagggggagggaccagctgggcaccctggggtctggcaatcacttc
ttggagatacaggtggtggacaagatatacgacgagaaggtggccaagctcttcggcata
gagagggaaggccaggtagtggtaatgatccacacggggagcagaggcttcggccaccag
gtggcgacggactacctcttgatcatggagaggaaaatgaggcagtgggggctaaacctg
ccagatagggagctggctgcagcgccgcttaaggacaaggtggcggaggactacatcaag
gccatggcatctgcggctaacttcgcctggacgaaccgccacatcatcatgcactgggtg
agggaggcgtttaagaaggtgttcggctctattgagaaagttggtctggagatagtatac
gacgtggctcacaacatcgccaagctggaggagcacgtcgtggacgagaagggcactgtt
aagaaggtgtgggtccaccgcaagggcgccactagggccttcccgcccggcaggccggag
atcccggcgaagtacagagaggtaggccagccggtgctgatccccggctctatgggcaca
gcctcgtggatcctcgtcggcactcacgattccatgaggctgaccttcggcactgcgccc
cacggcgctgggagggtgctcagccgcgaagccgccattaggatgtacccgccgcacaag
gtgcaggaggagatgtccaagagggggataatagtcaggtctgctgagaccgaggtgata
agcgaagaggcgccttgggcctacaaggacgtggaccgcgtagtcgaagccgcccaccaa
gtaggatttgctaggaaagtggtcaggcagaggcctataggagtagtaaagggctaa
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