Paraglaciecola sp. T6c: Patl_1632
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Entry
Patl_1632 CDS
T00372
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Patl_1632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pat03019
]
Patl_1632
03016 Transfer RNA biogenesis [BR:
pat03016
]
Patl_1632
Enzymes [BR:
pat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Patl_1632
Messenger RNA biogenesis [BR:
pat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Patl_1632
Transfer RNA biogenesis [BR:
pat03016
]
Prokaryotic type
tRNA degradation factors
Patl_1632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_2
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
ABG40154
UniProt:
Q15VD4
LinkDB
All DBs
Position
1941283..1943394
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AA seq
703 aa
AA seq
DB search
MTPITKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTV
NYQERTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSAN
PEIPTDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELEISQLDLVVAG
TKGAVLMVESEAEVLSEDVMLGAVMFGHEQMQTVVNAVTEFAAEVNTPKWDWVAEPANVT
LKDKIKALAEAEMTEAYQISDKMARKDAIVALTDKTVAAIVEADAEQDAKEVSELLHELE
SDVVRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERD
AQMIDGLNGKVDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEKEF
PYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSDI
LGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAI
SGHRDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRSITEASDTNIEIEDDGTIKIFATE
RAKADIAISKIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNK
VADHLSEGQIINVKVMEIDRQNRVRLSIKELLEKPAAPAEGNE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgactcctattactaaatcatttcagtatggtcagcatactgtcacgctagaaacgggc
gtaatcgctcgtcaagcaaccgctgctgttatggcaagcatggacgacacatcagtgttg
gtttctgttgttggtaaaaaagacaccaagccaggccaagacttcttcccgttaacggtt
aactaccaagaaagaacgtacgctgcgggtaaaatcccaggtggtttctttaagcgtgaa
ggtcgcccttctgaatacgaaacactcacgtctcgtttgattgaccgtccaattcgtcca
ttattccctgacgggttcatgaacgaagtacaaatcatagtgacggttgtttcagctaac
cctgaaattccaactgacatcatctcgctaatcggtacgtctgccgcgcttgctatctca
ggtatgcctttcaatggtcctgttggtgctgcgcgtgttggttacactgatggccaatat
gtacttaatacacgtacttctgagcttgaaattagccaactagacttagtggttgccggt
accaaaggcgcagtattgatggttgagtcagaagctgaagtattgtctgaagacgtgatg
ctaggtgccgttatgttcggtcacgagcaaatgcaaactgttgttaatgctgtgactgaa
tttgctgctgaagttaacacgcctaagtgggattgggttgctgagcctgctaacgtcaca
cttaaagacaaaattaaagcactcgctgaagctgaaatgacagaggcgtatcaaatctct
gacaagatggcgcgtaaagacgctatcgttgctctaacggacaaaaccgttgctgcgatt
gttgaagcagatgcagagcaagacgctaaagaagtatctgagcttttacatgagcttgaa
agtgacgtagtacgttcacgtattcttgctggtcaaccacgtatcgatggtcgcgaccct
gcgatgatccgtgcacttgacgtagcaacgggtattttgccacgtactcacggttctgct
ttgttcactcgtggtgaaacacaagccatcgttgccgctaccctagggactgagcgtgac
gcacagatgattgacggtctaaacggtaaagtggatagccgcttcatgttgcattacaac
ttccctccttactgtgtaggcgagacaggttttgttggttcacctaagcgtcgcgaaata
ggccacggtcgtctagcaaaacgtggtattcaagcggttatgccgtctgaaaaagaattc
ccgtacgtagtacgtgtggtgtctgaaatcactgaatcaaacggttcgtcttctatggca
tcagtttgtggtacttctttggcattgatggacgcgggtgttccaattaaagcatcagta
gctggtattgctatgggtcttgtgaaaaacgatgaaaacttcgttgttctttcagacatc
ttgggtgacgaagatcaccttggtgacatggactttaaagtagccggtaccactgaaggc
atcactgcgcttcaaatggatatcaaaatcgaaggtatcactcaagaaatcatgcaagtt
gctttgaaacaagcaaaagaagcgcgtttgcatattctaggtgtgatggaccaagcgatt
tctggtcaccgtgatgaaatgtctgaattcgctccgcgtatttacacattgaaaatcgac
caagataaaatccgtgacgttatcggtaaaggcggcgcaatgatccgttctattactgaa
gcatctgacactaacatcgaaatcgaagatgatggcacaatcaaaatcttcgctaccgag
cgtgctaaagctgatatcgctatcagcaaaattgagcaagtaacggctgatgttgaagca
ggcaaaacctacgaaggtaaagtgacgcgtatcgttgatttcggtgcgttcgttgaaatc
ttgccgggtaaggaaggtctagtacacatttcacaaatcgctcatgagcgtgtgaataaa
gtggctgatcatcttagcgaaggtcaaatcatcaacgttaaagtgatggaaattgaccgt
caaaaccgtgttcgtttgagtattaaagaattgctagaaaagccagcagcacctgctgaa
ggcaacgagtaa
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