Pogonomyrmex barbatus (red harvester ant): 105429271
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Entry
105429271 CDS
T04903
Name
(RefSeq) collagen alpha-1(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105429271
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pbar00536
]
105429271
Glycosaminoglycan binding proteins [BR:
pbar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105429271
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
105429271
NCBI-ProteinID:
XP_011640440
UniProt:
A0A6I9WDM8
LinkDB
All DBs
Position
Unknown
AA seq
1698 aa
AA seq
DB search
MCPRDHAKRQWKTPRSASITLLARSLLLLVIASGFLSKTANAALRDVAKNVTDIIEATRM
QEQLFGVQRTESRCRNGTIAYDIMESAILMTSTNTLFPTGIPQDFSILIVAKPKANESSF
KDHSVLFTIYGDSGEEQLILSMGRDIKLFYSTNPDDRNKSISFGVDVSDGRWHRLGVSIK
GDSVTIILDCTRPITKKLWRNLEKTIAGIILIGQQLKGDLYLGSLEMLKIAPNPDAAYEI
CTVFAPDCEHQSRYRSSYNSSSNEDDYEEEEEDENNSDEDNENFLVYGTTDIIKTFESIT
ENPTPYEMEMTTMTANVYNMESNYEQNFEEPTSDPYKEDAKHNFRGLPGLRGYPGPPGIP
GPPGKKGEPGRDGLDGLPGLPGPPGNVFVIPSLNQQGNEKGPDSQIEMLRQMISQHMIAM
RGVEGPMGLTGVPGPEGPPGPEGQKGEPGEIGEPGPRGEQGHPGHPGREGRRGHSGRDGE
RGLSGPPGIKGEQGSIGLPGLPGDKGERGLPGIPGEPGLQGHEGMQGEDGLPGLPGLPGE
LGPRGFIGPRGFSGLPGNPGIPGSEGPPGIKGNVGPLGPPGAPGPPGPVGLVGSPGPQGS
PGPIGLVGPQGKPGIPGLPGVDGPPGLPGNPGIPGMKGEQGPPGPQGSVGFPGVRGVKGD
EGQRGLSGERGEKGERGLEGEKGDAGAKGEPGITGPQGIPGLEGLEGPKGFEGPRGETGS
AGPPGEKGKIGIPGYAGYPGNPGEKGDRGQSGIQGPSGDKGERGNTGLQGERGAPGPRGF
RGTRGRRGAEGLPGPKGDTGQPGPVGLSGEIGPPGVEGPRGFVGPAGPPGLGGKDGMPGP
PGERGPIGESGPPGPPGTPGVIGPPGPPGESGQPGEPGAPGSLGAPGEIGLPGEQGKEGS
PGPAGLMGIQGPPGPGGLPGFPGERGLSGLPGLPGLKGEIGPIGPYGPPGDKGAQGEPGK
DGPSGPEGKQGLKGEKGSTGLKGERGDSGLIGPVGRDGLPGQRGLPGPPGPIGSPGEDGD
KGNIGSPGEKGFKGSQGDVGLPGPQGIQGPRGEPGLVGPPGEKGPPGEIGQQGPKGEVGL
VGATGPTGPVGPSGLPGESGVKGEVGDPGAIGPVGPPGIPGERGMTGLKGLKGAEGPPGP
EGRQGEKGDSGMPGLTGKPGIEGKQGERGSPGVKGEEGKIGLPGLLGPRGLIGPEGPKGD
IGLPGFPGPPGEPGLMGAKGEPGKDGEDGRVGDPGISGEIGPPGKEGLPGSPGQPGPEGP
AGQQGNTGLPGEKGDIGLPGAPGLQGHVGPQGLPGLPGLTGDRGLPGIAGENGLVGMPGT
AGVPGSIGPPGPKGPRGDRGRRGIKGHRGEPGLIGIKGDQGNEGEKGDRGLPGIEGPKGN
PGRPGHDGPRGEQGFIGLPGPPGPPGPKGNTGNDGTRGDIGPAGPPGPPGPPGLSMEQLG
LDGIIPSIFHDESTRRKRDIFEDIDEEETFDMRLLEINKAFVNIRQELNSIRRPTGTRDN
PARMCKDLFYGHPDFNDGWYWIDPNLGMPDDAINVFCNITNMGETCIFPDIHSSHMPSIP
WRKEDNKTDWYSRLRGGFKMSYETIGVVQMNFLRLLNQEAYQNFTYTCTNSVAWYNNEDR
GYKFSLRLLGDNEDEFSYDGIRPHLITDDCKNRSGKHETVFLISTKKLQQLPLVDFYPID
YGLPQQAFGFKVGPVCFK
NT seq
5097 nt
NT seq
+upstream
nt +downstream
nt
atgtgtccacgggaccacgcgaagaggcaatggaaaacgccgcgatccgcgtcgatcacg
ctcctcgcgcgttcactgctgctgctggtgatcgcttccggttttctgtcaaagacggcg
aacgccgcgttgcgagatgtggcgaagaatgtgacggatataattgaagccacgaggatg
caagagcaacttttcggagtgcaaagaacggaaagtcgttgcagaaatggtacgatcgcg
tatgacatcatggaatccgcgattctgatgacttctaccaatacgttatttccaaccggt
ataccgcaggatttttctatcttgattgtcgcaaagccaaaagctaatgaatcttcgttt
aaagatcactcggttctcttcaccatctatggtgacagcggtgaggaacagctgatttta
tcgatgggacgcgatattaaactcttctacagcacaaatccggatgataggaacaaatcg
atttcctttggtgttgatgtttccgatggacggtggcatcgattgggagttagcatcaag
ggcgactctgttacgattattctcgattgcacgagacctatcacaaagaagctgtggagg
aatttggagaaaacgatcgctggtatcatcctgatcggacagcaacttaagggtgattta
tatctgggaagtctcgagatgttgaagattgctccaaatccagacgctgcttatgaaatc
tgcacagtgtttgcgccagactgtgaacatcaatcaagatatagatcgagttataattcg
tcttccaatgaagatgattacgaagaagaagaagaagacgagaacaattcggatgaagat
aacgagaactttttagtttatggcacgacagatataattaagacatttgaatcaataaca
gagaatcccacaccttatgaaatggaaatgacaacaatgactgcaaatgtgtacaatatg
gaatcaaattatgaacagaattttgaggaacctacaagtgatccttataaggaagatgca
aaacataattttcgaggtttacctggacttcgtggatatcctggacctccagggattcct
ggtcctcccggcaaaaagggcgaacccggtcgagatggactagatggattaccaggtcta
ccaggtccaccaggtaatgttttcgtgataccatccttgaatcaacaaggaaacgagaaa
ggaccggattctcagatagaaatgctgcggcagatgatatcacaacacatgattgcaatg
agaggcgtagaaggtccgatgggccttacaggcgtcccaggtccagaaggaccgcctgga
cctgaaggacagaaaggagaacctggtgaaattggtgaacctggaccaaggggagaacaa
ggacatcccggacatcctggcagagagggtagaagaggtcattctggtagagatggcgaa
cgtggccttagtggaccgccaggaattaagggcgagcaaggatcgataggattaccaggt
cttccaggtgataaaggcgaacgtgggcttccaggtatacctggagaaccaggtttacag
ggccatgaaggaatgcagggtgaagacggtcttccaggtttaccaggtctacctggtgaa
ttgggtccaagaggatttattggaccaagaggtttttccggattaccgggtaatcctggt
attcctggaagcgaagggccgcctggtattaagggtaatgttggtccactcggtccacct
ggtgcaccaggcccaccaggacctgtaggtttggtgggatcacctggacctcaaggttcg
ccaggaccgattggtttagttggtccacaaggaaagcctgggattcccgggcttccgggt
gttgacggacctcctggacttccgggcaatcccggaattcccgggatgaaaggcgagcaa
ggtccaccaggtccacagggatcagtaggatttccgggtgtacggggtgtaaagggcgat
gaagggcaacgtggactgtcgggtgaacgcggcgaaaagggcgaaagaggattagaaggc
gaaaaaggtgatgctggagcgaaaggagagcctggaataacaggaccacaaggaattcct
ggcctcgaaggtttggaaggaccgaagggtttcgaaggacctcgtggtgagactggttcc
gctggtccgcctggagaaaagggaaagataggtatacccggatacgctggctatcctgga
aatcctggagaaaaaggggacagaggacaatcaggaattcaagggccaagtggcgataaa
ggcgaaagaggaaacaccggattgcaaggagaacgaggtgcaccaggtccacggggtttc
aggggaacgcgtggtagaagaggcgcagaaggattaccaggaccaaaaggtgacactggt
caaccaggaccagttggattgtccggtgaaatcggtcctcctggcgttgaaggaccacgt
ggatttgttggaccagcaggtccaccgggtcttggcggaaaagatggtatgcctggacca
cctggcgaacgtggtccaattggagaatcgggacctccaggacctccaggaactcccggt
gttatcggtcctccaggaccacctggagaatctggacaaccaggtgaacctggagcacct
ggcagtctcggagctccaggtgagattggtctaccaggcgaacaagggaaagaaggatcg
cctggtccagctggcttaatgggaatccaaggacccccaggtcctggtggattaccagga
tttccaggtgaaagaggtctgagtgggttgccgggattgcctggtttaaaaggagaaata
ggacctatcggaccttatggaccacccggagataagggtgctcaaggtgaacctggtaaa
gatggaccatcaggtccagaaggaaaacaaggactcaaaggagagaagggttcaaccgga
cttaaaggcgaaagaggtgattctggattaattgggccagtaggtcgcgacggtctaccg
ggacaacgtggtttacctggtccacctggacctattggctctccaggcgaagatggtgat
aaaggaaacataggttcacccggtgaaaaaggatttaaaggatctcaaggagatgtaggt
ctcccgggtcctcaaggaattcaaggaccacgtggtgaacctggcttagtaggtcctcct
ggggaaaaaggaccaccaggtgagattggtcagcaaggaccaaaaggcgaagttggactg
gttggagcaactggaccaactggacctgtaggaccaagtggtttacctggtgaatcaggt
gtaaaaggtgaagtcggagatcctggagcaatcggtcctgtaggaccaccgggaattccg
ggagaacgaggcatgacaggattgaaaggcttgaaaggtgcagaaggtccgccaggtcca
gaaggtcgtcaaggtgaaaaaggagatagtggaatgccaggacttacggggaaaccagga
atagagggcaaacagggagaaagaggttcacccggagtaaaaggagaagaaggcaaaata
ggacttcccggacttcttggaccacgaggattaattggtcctgaaggaccaaaaggtgat
attggtttaccgggatttcctggtccacccggagaacctggtcttatgggtgcaaaaggc
gagcctggaaaggatggtgaggatggacgagtaggcgatcctggcatatcaggtgaaatt
ggaccacctggcaaagaaggattaccaggttctcctggacaaccgggtccagaaggtccg
gcgggtcagcaaggtaacacaggtttaccaggagaaaagggagatattggtcttcccgga
gcaccaggtcttcaaggacatgtcggacctcaaggtcttcctggtttgcctggattgaca
ggggatagaggtttgccgggcatagctggagaaaacggcctcgtgggtatgccgggaacc
gctggagttcctggaagtatcggaccgcctggtccaaagggtccgagaggcgacagaggt
cggagaggtattaaaggacatcgaggcgaaccgggacttattggaattaaaggtgatcaa
ggaaatgaaggagagaaaggtgatcgtggattgcctggaatagaagggcctaagggaaat
cctgggcgaccaggccatgatggacctagaggcgaacaaggatttatcggtctacctggt
ccgccgggaccacccggaccgaaaggaaatactgggaatgatggaacgcgaggtgacata
ggtccggcgggtccgccaggtccacccggaccacccggtttatcaatggaacaactcggt
ctggacggaataattccgtcgatatttcacgatgaatcaactagaagaaaacgcgacatt
tttgaagatattgatgaagaagagacatttgacatgaggcttttagagataaacaaggct
tttgtcaatatacgacaggaattgaattcaatacgtagaccaactggtaccagagataat
ccagcaagaatgtgcaaggacttgttttatggacatcctgattttaatgatggttggtat
tggatcgatccaaacttgggtatgcctgacgatgctatcaatgtgttttgcaacatcacg
aatatgggagaaacttgcatttttcctgatattcatagcagtcacatgccaagtatacca
tggaggaaagaggacaataaaaccgactggtattcgcgtttgcgtggaggatttaaaatg
agttacgagacgataggagtagtacaaatgaatttcctgcgtttgcttaatcaagaagct
tatcaaaatttcacatacacgtgcacgaatagcgtcgcctggtacaataacgaggatcgc
ggttataaattttcgttgcgattactcggcgataacgaagacgaattctcatacgacggt
attaggccccatcttatcacggacgattgcaagaatcgaagtggcaagcatgagaccgtg
ttcttaattagcactaaaaaactgcaacagttgccgctggtcgatttttatccaatcgat
tacggattgccgcaacaagcttttggcttcaaagtaggcccggtttgcttcaaataa
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integrated database retrieval system
