Pseudomonas brassicacearum DF41: CD58_09705
Help
Entry
CD58_09705 CDS
T03174
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pbc
Pseudomonas brassicacearum DF41
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbc03032
]
CD58_09705
03400 DNA repair and recombination proteins [BR:
pbc03400
]
CD58_09705
Enzymes [BR:
pbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CD58_09705
DNA replication proteins [BR:
pbc03032
]
Prokaryotic type
DNA Topoisomerases
CD58_09705
DNA repair and recombination proteins [BR:
pbc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CD58_09705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AHL33158
UniProt:
W8PH93
LinkDB
All DBs
Position
2148711..2151323
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKDKARKQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAT
VRFDVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIESEFGKKYLPETPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQITKPGDDDVLPDMAQGDVMKLIKLDPTQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPDNGMRANQPVMT
DIPCLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVMEILPHKSEIDPKYHFLCEAPQKDPEGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAYYDGGKWTVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggcaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagcctgccgccaagcgcggcaaggctgcggctggtgaa
gcgccggcgctgtcgccgaaagacaaggcgcgcaagcagctggtctcgcgcatgggggtc
gatccggaacacggctggaaagccaagtacgagatcctcccaggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgccgacaccatctatctcgcgacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccattggtggggatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggccatccaggaagccttctcccag
ccaggcgagctggacatcgatcgggtcaacgcccagcaggcgcgccgcttccttgaccgc
gtggtgggctacatggtctcgccactgctgtgggccaagatcgcccgcggcctgtctgcc
ggtcgcgtgcagtcggttgcggtgaagctggtggtggagcgcgagcgcgagatccgcgca
ttcattcctgaagagtactgggaagtccatgccgacctcggcaccgcgaagggcgccacc
gtgcgcttcgacgtggcgcgggaaaagggcgaagccttcaagccgctcaacgaagcccag
gccatggcggcgctggaaaagctcaaggcttccagctacagcatcgtcaagcgcgaagac
aagccgaccagcagcaagccgtcggcgccgttcattacttctaccctgcaacaggccgcg
agcaaccgcctgggctttggtgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacctatatgcgtaccgactcgaccaacctttcggtcgatgccgtggcg
atggcgcgcacttatatagaaagcgagttcggcaagaaatacctgccggaaacgccgaac
gtctacagcagcaaggaaggcgcgcaagaggcgcacgaagcgattcgtccgtccgacgcc
aacaccgagccaagtaagttgtcgggcatggaacgcgatgccgagcgtctctacgagctg
atctggcgccagttcctggcctgccagatgctgccggcgcaatacctgtcgaccacggtc
agcgtcggtgccggcgacttcgagttgcgcgccaagggccgcatcctgaagttcgacggc
tacacccgtgtcatgccgcaaatcaccaagcctggggatgacgacgtcctgccggacatg
gcccagggcgatgtgatgaagctgatcaagcttgatccgacgcagcacttcaccaagccg
ccggcccgttattcggaagccagcctggtcaaggaaatggaaaagcgtggcatcggtcgt
ccttcgacctacgcggcgatcatttccaccatccaggatcgtggctacgtggcgctgcac
aaccgtcgtttctattcggaaaagatgggggacattgttaccgagcgtttgtccgagagc
ttctcgaacctgatggactacggcttcaccgccggcatggaagagaacctcgacgatgtg
gcccagggtgagcgggactggaaaaacgtcctcgacgagttctacggcgatttcaagaaa
aaactcgaagtggccgaaagcccggacaacggcatgcgggccaaccagccggtcatgacc
gacattccgtgcctgacctgcggacgtccgatgcaaatccgcaccgcctcgaccggtgtc
ttcctcggttgctcgggctacagcctgccacccaaggaacgctgcaaggcgacggtcaac
ctcgtgccgggcgatgaaatcgcagccgacgacgagggcgagtcggaatccctggtattg
cgcggcaagcatcgctgcccgatctgcagcacggcgatggatgcctacctgctggatgaa
aagcgcaagctgcacatctgcggtaacaatccggattgcgccggttacgagatcgaagaa
ggcacctaccgcatcaagggctacgaaggtccgagcctggaatgcgacaagtgcggcagc
gagatgcagctcaagaccggtcgtttcggcaagttcttcggttgcaccaacccaacctgc
aagaacacccgcaaactgctcaagagcggtgatgcggcgccgccgaagatggatccggtg
aagatgccggagctcaagtgcgagaaggtcaatgacacctacatcttgcgcgacggtgct
tccggcctgttcctggcggccagtcagttcccgaaaaaccgcgagacccgtgcaccgttg
gtgatggagatcctgccgcataagagcgagatcgatccgaagtaccatttcctctgtgaa
gcgccgcaaaaagatccggaggggcgcccggcggtgattcgctacagccgcaagaccaag
gagcagtatgtgcagaccgaagtcgacggcaagcctaccggctggaaggcgtactacgat
ggcggtaaatggaccgttgaagacaagcgctga
DBGET
integrated database retrieval system
