KEGG   Paenibacillus beijingensis: VN24_04100
Entry
VN24_04100        CDS       T03802                                 
Name
(GenBank) DNA polymerase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pbj  Paenibacillus beijingensis
Pathway
pbj03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pbj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    VN24_04100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pbj03400]
    VN24_04100
Enzymes [BR:pbj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VN24_04100
DNA repair and recombination proteins [BR:pbj03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     VN24_04100
SSDB
Motif
Pfam: LigD_Prim-Pol
Other DBs
NCBI-ProteinID: AJY73942
UniProt: A0A0D5NG40
LinkDB
Position
865963..866868
AA seq 301 aa
MGAKHKGVLNVEGQQIAVSNPDKVLWPELGITKLMYLQVLAGLAPYLLKHCADRYLTTIR
YPNGIHGKSFYQKNAPEPTPDFVRIAHQGDIGYVVLDSLPTLIWLANLACLEFHASFDRI
GRPLHPTEWVIDIDPSREEEPRIMEAAALVGALLESLGIPSIPKTSGATGVQIIVPVTGD
MTFDELRGIGQFVGEYLARKHPRLFTIERLKKNRGELIYFDYLQHYGGKTIAAPYTPRAR
KGATVSTPLTWDEVRGGAQPGDFHLLNIGERLRRTGDLLQSVPPQNLRPILAFLKQPQPM
R
NT seq 906 nt   +upstreamnt  +downstreamnt
atgggcgcgaagcacaaaggcgtattgaacgtagaagggcagcaaatcgcggtcagcaat
ccggacaaagtgctgtggccggagctcggcattacgaagctgatgtatttgcaggtgctg
gcgggtttggcgccttatctgctgaagcactgcgcggaccggtacttgacaacaatccgc
tatccgaacggcattcacggcaaatcgttttaccagaaaaatgcccccgagccgacgccc
gacttcgtccggatcgcccatcagggtgatatcggctacgtcgtgctcgattcgctgcct
accctcatttggcttgccaacctcgcctgcctcgaatttcacgcttccttcgaccggatc
ggccgtccgctccatccgacggagtgggtcatcgacattgacccgtcgcgcgaagaagag
ccgcgtattatggaggccgcggctctcgtcggcgcgctgctggaatcgctcggcatcccc
tccattccgaagacaagcggtgcgaccggcgtgcaaattatcgtaccggttaccggggat
atgacgttcgacgagctgcggggcatcggccaattcgtcggcgaatatttggcgcgcaag
catccgcggctattcacgatcgagaggctgaagaagaaccgcggcgagctcatctacttc
gactaccttcagcattacggcggcaaaacgatcgccgccccctacacgccccgcgcgcgc
aaaggagcgaccgtgtcgacgccgctcacctgggacgaggtgcgcggcggcgcgcagcca
ggcgatttccacctgctcaacatcggtgagcggctgcgccggaccggcgatctgctgcag
agcgtaccgccgcaaaatttgcggccgattctcgcctttttgaagcagccgcagccgatg
cgttag

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