Paenibacillus bovis: AR543_10400
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Entry
AR543_10400 CDS
T04407
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbv
Paenibacillus bovis
Pathway
pbv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AR543_10400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbv03019
]
AR543_10400
03009 Ribosome biogenesis [BR:
pbv03009
]
AR543_10400
Enzymes [BR:
pbv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AR543_10400
Messenger RNA biogenesis [BR:
pbv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AR543_10400
Ribosome biogenesis [BR:
pbv03009
]
Prokaryotic type
rRNA helicases
AR543_10400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_30
Helicase_RecD
AAA_22
GRP
Motif
Other DBs
NCBI-ProteinID:
ANF96374
UniProt:
A0A172ZFC7
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All DBs
Position
2453410..2455017
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AA seq
535 aa
AA seq
DB search
MTKFVDFGLGENVLKAIMELGFEEATPIQSQAIPIAMEGSDLIGQAQTGTGKTAAFSIPI
INKIERSEEKIVALVMAPTRELAIQVAEEIEKLARFKGIRSLPIYGGQEIGRQIRALKKK
PQIIIGTPGRLLDHINRKTIKLEDVQHVVLDEADEMLDMGFMEDIQSILKQVPEVRQTML
FSATMPPNIQRLASQFLKDPKHVSVIPKQVSAPLIDQSYIEVNERQKFDALSRLLDMESP
ELAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGAAYSFVTPRELDHLHFIERVTR
HKITRKPLPSLAEAIEGKQRITAERLLELVQDDTAPLNEYKGIAIQLLESYDSVNLLAAA
IKLLTGDKKDAQIDLTPEDPIRAKRRKPDVRSGGRKPSGSYNRSGGGYKGNNSGGSRGGY
GSGGGGYKGGSRDGAGSSSREGGRDYSRDRKPRSNNGGSSEGRRPSTTKRPDSFE
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
ttgactaaatttgtagactttgggttaggcgaaaatgtattaaaagcaatcatggaactg
ggttttgaagaagcaactccaattcaatcccaagcaattccgattgcaatggaaggcagc
gacctgatcggtcaggctcaaacaggtacgggtaaaacagcagcattcagtattcctatt
attaacaagatcgaacgttcggaagaaaaaatcgtagcactggtaatggctcctacacgt
gagcttgctatccaggtagccgaagaaatcgaaaaactggcacgtttcaaaggtattcgt
tccctgccaatctacggcggacaggaaattggccgtcagatccgtgcactgaaaaagaaa
ccacaaatcattatcggtacaccaggtcgtttgcttgaccacatcaaccgtaaaacaatc
aagctggaagatgtacagcacgttgtactggatgaagcggatgaaatgctggatatgggc
ttcatggaagatatccagtctatcctgaagcaggttccggaagtacgtcaaacaatgctt
ttctctgcgacaatgcctcctaacattcagcgtctggcaagccagttcctgaaagatcca
aaacacgtatccgttattccaaaacaggtaagtgcaccattgatcgatcaatcgtatatc
gaagtcaatgagcgccagaaatttgatgccctgtcccgcttgctggatatggaatctcct
gagctggctatcgtattcggacgtaccaagcgtcgtgtagacgaactgtccgaagctttg
caaaaacgcggatattctgcagatggtctgcatggtgacctatcccagaaccagcgcgat
aacgttatgcgcaaattccgtgacggcagcattgatgtactggtagctacagacgtagca
gcacgtggtctggatgtatccggcgttactcacgttgttaactttgacctgccacaggat
ccagagagctatgttcaccgtatcggccgtaccggtcgtgcaggtaaagaaggcgcagca
tattccttcgtcactcctcgtgagctggatcacctgcactttatcgagcgtgtaacgcgc
cacaaaatcactcgcaaaccactgccttctctggcagaagcgattgagggtaaacaacgc
atcacagctgagcgtctgctggaactggttcaggacgacactgctcctctgaacgagtac
aaaggcatcgcgatccaattgctggaaagctatgattccgttaacctgctggcagcagct
atcaagcttctgacaggcgacaaaaaagatgcgcaaatcgatctgacaccagaagatcca
attcgtgcaaaacgtcgtaaaccagatgttcgctccggcggacgcaagccatccggcagc
tacaaccgtagcggtggtggttacaaaggtaacaacagcggcggaagccgtggtggatat
ggcagcggcggcggtggttacaaaggcggaagccgtgacggcgctggcagcagcagtcgt
gaaggtggacgcgattactctcgtgaccgcaagccacgcagcaacaatggcggaagcagc
gaaggacgtcgtccttctacaaccaaacgccctgattcttttgaataa
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