Syntrophotalea carbinolica: Pcar_0570
Help
Entry
Pcar_0570 CDS
T00285
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pca
Syntrophotalea carbinolica
Pathway
pca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pcar_0570 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pca03019
]
Pcar_0570 (rhlE-2)
Enzymes [BR:
pca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pcar_0570 (rhlE-2)
Messenger RNA biogenesis [BR:
pca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pcar_0570 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABA87830
UniProt:
Q3A721
LinkDB
All DBs
Position
694183..695481
Genome browser
AA seq
432 aa
AA seq
DB search
MEFNSFNFHPQVAKGIVAAGYVTPTPIQAQAIPSVIDGRDVMGLAQTGTGKTAAFALPIL
QRLIDGPRGRLRALVVAPTRELAEQIHQAIGELGRHTGLRSMTVYGGVNIRPQIAGLKRG
VDIVVACPGRLIDHIGQKTIDLSNIEVLVLDEADQMFDMGFFPAVRQILRHVPAQRQTLL
FSATMPAAIRRLSGEVLTSPMTVQVGNTTPAETVSHALYPVAQHQKTAMLLELLSAVDSR
SVLVFTRTKHRAKRLGLQLGKAGYQATSLQGNLSQARRQEALTGFRDGKYEILVATDIAA
RGIDVSQVSHVINYDIPDTAEAYVHRIGRTGRASRKGEAFTLVTGEDNAMVRAIEKVLDA
SLERRTIEGFDYNTPAPPRTDRAGRGNASRRSPRTTRSSKPAAGRGGGQRRRQPAGAANA
RSSSAKGRTTER
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggaattcaacagtttcaattttcacccgcaggtcgccaaaggtattgtcgccgcgggt
tatgttacacctacaccgatacaggcacaggccatcccctcggttattgacgggcgcgac
gtcatgggcctggcccagaccggcaccggcaagacggcagcttttgctttgccgattctg
caacgtctgatcgacggccccagggggcgcttgcgggccttggtggtggcgccgacgcgc
gaactggccgaacagattcaccaggctatcggcgaactgggacggcataccggattacgc
agcatgacggtttatggcggcgtgaatatccggccgcaaattgccggcctgaagcggggc
gttgatattgtcgtggcctgcccgggccgtttgatcgaccatatcggccagaaaaccatc
gatctctcaaacatcgaggttctggtactggacgaagccgatcaaatgtttgatatggga
ttcttcccggcggtgcggcagattctgcgacatgtacccgcgcagcgtcagacgctgctg
ttttccgccaccatgcccgctgcaatccgccgtttatccggcgaagttctgaccagcccg
atgacggttcaggtcgggaacacgacgccggctgaaaccgtaagccatgcgctgtatccg
gtagctcaacatcaaaagacggccatgttgctggagttgctttcggcggtcgatagccgc
tcggtgctggtttttacccgtaccaagcatcgggccaaacggctgggactgcaactcggg
aaggccggttaccaggccacgtcgttgcaggggaatctgtcccaggcccgccgtcaggaa
gccttgacgggattcagggatggcaagtacgaaatattggtggcgacggatattgcggcc
cgcggtatcgatgtgtcccaggtttcccatgtgatcaactacgacataccggatacggcc
gaggcctatgtgcatcgcatcggtcgtaccggcagggcttcgcgcaagggggaagcgttc
accttggtcaccggagaggataacgccatggtcagggctatcgaaaaggtgctcgatgct
tctctggagcgacgcaccatcgaaggctttgattacaacacccccgctcccccgcgaacc
gacagagctggccgggggaatgcttccaggcgttcaccgcgcaccacccgttcgtcgaaa
cctgcggccggccgtggcggcggtcaaaggcgtcgccagcctgccggtgcagccaatgct
cggagttcctctgcaaaagggcggactacggaaaggtaa
DBGET
integrated database retrieval system
