Pseudomonas chlororaphis PA23: EY04_04915
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Entry
EY04_04915 CDS
T03201
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pch
Pseudomonas chlororaphis PA23
Pathway
pch03410
Base excision repair
pch03430
Mismatch repair
pch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EY04_04915
03430 Mismatch repair
EY04_04915
03440 Homologous recombination
EY04_04915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pch03400
]
EY04_04915
DNA repair and recombination proteins [BR:
pch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
EY04_04915
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
EY04_04915
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EY04_04915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AIC18246
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All DBs
Position
1126327..1128036
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AA seq
569 aa
AA seq
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MRIEPRELPATLPFLGDLPPLLTRLYAARGVQSEAELDKSLARLIPFQQLKGIEAAVDLL
VTALEQRERILIVGDFDADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAV
ALERQPQLLITVDNGISSVEGVAAAKAAGLKVLVTDHHLPGHELPAADAIVNPNQPGCEF
PSKALAGVGVIFYVLMALRTRLRSLGWYETKPQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGIKAILEVAKREASRITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLSHDMALAREMAGQLDELNQDRKSIEQGMQREALAQLKDLPVESMPFGLCLFEPDWHQG
VIGILASRLKERYHRPTIAFADAGEGMLKGSARSVPGFHIRDALDAVAAKHPDLISKFGG
HAMAAGLSLPEQNFPAFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHA
GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLRSECGSVKLDGIAFGIDRDIWPNPTIR
WVELAYKLDLNEFRGQETVQLMIAHIEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgaacctcgtgagttgcccgccaccctgccgtttctcggtgatctgccgccg
ttgctgacccgcctgtacgccgcccgtggcgtgcagtccgaggccgagctggacaagagc
ctggcgcggttgatcccgttccagcagctcaagggcatcgaggcggcggtggatctgctg
gtgacggcgctggagcagcgcgagcgcatcctgatcgtcggcgacttcgacgccgacggc
gccaccgccagtaccgtgggcatgctcggcctgcgcctgctgggcgcggcccatgtcgat
tacttggtgccgaaccgtttcgaatacggctacggcctgaccccggaaatcgtcgcggtg
gccctggagcgccagccccagctgctgatcaccgtggacaacggcatctccagtgtcgag
ggcgtggcggcagccaaggcggccgggctgaaagtgctggtcaccgaccaccacttgccg
ggccacgagttaccggcggccgatgccatcgtcaacccgaaccagcccggctgcgagttt
ccgagcaaggccctggccggggtcggggtgatcttttatgtgctgatggcgctgcggacc
cgcctgcgcagccttggctggtacgaaaccaagccgcagccgaacatcggcgaactgctg
gatctggtggcgctgggcagcgtcgccgacgtggtgccgctggacgcgaacaaccgcatc
ctggtgcaccaggggctggagcggattcgtgccgggcgcgcgcggccggggatcaaggcg
atcctcgaagtggccaagcgcgaggcgtcgcgcatcacctccaccgacctgggcttcatc
cttggcccacggctgaatgccgccgggcgcctggacgatatgagcctgggcatcgaatgc
ctgctcagccatgacatggccctggcgcgggaaatggccggccagctggacgagttgaac
caggatcgcaaatccatcgagcagggcatgcagcgcgaagccctggcccagctcaaggac
ttgccggtggagtcgatgccattcggcctgtgcctgttcgagcccgactggcaccagggg
gtgatcgggattctcgcttcgcggctgaaagagcgttaccaccggccgaccatcgccttt
gccgacgccggcgaaggcatgctcaagggctcggcgcgttcggtgccgggctttcatatc
cgcgatgccctggacgcggtggcggccaagcatccggacctgatcagcaagttcggcggt
cacgccatggccgccggcctgtcgctgccggagcagaatttcccggccttcgccgaagcc
ttcgatgccgaggtgcgccgccagctgcgcgaggaagacctgaccggacgcctgctgtcg
gacggcaccctggcggtggaagagttccacctcgaactggcccgcgccttgcgccatgcc
gggccctggggccagcactttcccgagccgctgttccatggcgtattccaattggtggaa
cagcgcgtggtcggcgagcgtcacctcaaggtggtgctgcgcagtgaatgcggctcggtg
aaactcgacggcatcgccttcggcatcgaccgcgatatctggccgaacccgaccatccgc
tgggtggaactggcctacaagctggacctcaacgagttccgcggccaggaaaccgtgcaa
ctgatgatcgcccatatcgaaccgcgttaa
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