Pseudomonas cichorii: PCH70_47630
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Entry
PCH70_47630 CDS
T03002
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
pci
Pseudomonas cichorii
Pathway
pci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCH70_47630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pci03019
]
PCH70_47630
Enzymes [BR:
pci01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
PCH70_47630
Messenger RNA biogenesis [BR:
pci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCH70_47630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AHF69916
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All DBs
Position
5510705..5512597
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AA seq
630 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDNFKLYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL
AHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGDV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRTGEAISLVAPDEEKL
LKSIERMTRQKIPDGDLMGFDINAVEAEKPEVRERPDVRNPRSARAPRAEGEKSSNNGGR
RDKGKDKGKEKPAAAAASGERPARQPRERKPREGTPREQRHSQPPRPSPDRAPDEFRDDE
VDNFGNRADYVSPYQGKNQGRGRRPGAPAAPGAAPAGAGRPQGSGRPANPRSSGAGTGTG
APAKRNGSGSGPRTGGGARDGQPRNRRPARDDQPRQEPAVRSSREGQQPQPKIVHKESKI
DRFPSAEQLDQLPSRPRGEKPALLTRNRDS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tatacccagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagacaggtactggtaaaaccggtggcttcgccctcccgattctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcatggcccgcgccaaccc
cgcgtactggtcctgaccccaacccgcgaactggctgcgcaggtgcatgacaacttcaag
ttgtatgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggtccaggccatggcccgtggcgtggacgtgctggtcgcctgcccgggccgcctg
ctcgacctggccggacaaggcagcgtcgatctgtcccacgttgaaatcctggtgctcgat
gaagccgaccggatgctcgacatgggcttcgtccatgacgtgaaaaaggtccttgcccgc
ctgccggccaagcgccagaacctgctgttctcggcaacgttctccaacgacatcaccgcc
ctggcaggcaagctgctgcacaaccccgagcgcatcgaagtcacgccaccgaacaccacg
gtcgagcgtatcgagcaacgggttttccgcctgccagccaaccacaagcgttcgctgctg
gcccacctgatcactcagggcgcatgggagcaggttctggtcttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctcagcgctgtcgcgatccac
ggcaacaagagccagaacgctcgtaccaaagccctggccgacttcaaggccggtgacgta
cggatcatggtcgccaccgatatcgccgcccgcggcctggatatcgaccagttgccacac
gtggtcaacttcgagctgccaaacgtcgatgaagactacgtgcaccgcatcggtcgtacc
ggccgtgcaggccgcaccggcgaggccatctcgctggttgcgccggacgaagaaaaactg
ctcaaaagcatcgagcgcatgacccgtcagaaaatccctgacggcgacctgatgggtttc
gacatcaatgcagtcgaggctgaaaagcctgaagttcgtgagcgtccggacgttcgcaat
ccacgctcagcccgtgccccacgtgctgaaggcgaaaagagcagcaacaacggcggccgt
cgcgacaagggcaaggacaaaggcaaggaaaagccggcagcagccgcagcgtccggcgaa
cgtccggcacgccagccgcgtgaaagaaaacctcgcgaaggcacgccacgcgagcagcgt
cattcgcaaccgccacgtccatcgcctgatcgcgcacctgacgagtttcgggatgacgaa
gtggataacttcggcaaccgcgctgactatgtaagcccttatcaaggcaagaaccagggc
cgtggccgtcgtcccggagcccctgccgctccaggcgcagcaccagctggcgccggacgc
ccacaaggttcgggccgccctgccaacccacgtagctctggtgcaggtactggcaccggc
gcacccgccaagcgtaatggctcgggttccggcccgcgcactgggggcggtgcccgtgat
ggtcagccacgcaatcgccgtccggcacgtgacgatcagccacgtcaggaaccggccgtt
cgcagctcccgtgaaggccagcaacctcagccgaaaatcgtgcacaaggaatcgaaaatc
gaccggttcccgtctgccgagcagctcgatcagttgccaagccgaccacgcggtgaaaaa
ccggccttgctgactcgcaaccgcgatagctga
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