Phanerochaete carnosa: PHACADRAFT_112021
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Entry
PHACADRAFT_112021 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pco
Phanerochaete carnosa
Pathway
pco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHACADRAFT_112021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pco03041
]
PHACADRAFT_112021
Spliceosome [BR:
pco03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
PHACADRAFT_112021
Complex C
U5 SnRNP specific factors
PHACADRAFT_112021
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
SRPRB
GBP
Motif
Other DBs
NCBI-GeneID:
18907650
NCBI-ProteinID:
XP_007390843
JGI:
Phaca1_112021
UniProt:
K5WQC5
LinkDB
All DBs
Position
Unknown
AA seq
982 aa
AA seq
DB search
MASFEDYDEFGNYIGADIDSDDEEEISQPYAQQQREPSAQPLEGFDDVLMEAADEGALMQ
VDEPVHNAVILHEDKQYYPTAQQVYGEDVETLVQEEDAQPLSEPIVAPIKVRRWTVEEKN
MPETRFDKGFLLQMTGFTEFVRNVAVVGHLHHGKTALMDMLVFETHKMDWDSDNQTRYTD
THVLSRERGISIKSSPMSLILQNSYGKSHLIHLIDTPGHVNFVDEVAPAIRLVDGVVLVV
DVVEGVMCNTEAIIRHCLQEGVKMTLVINKIDRLILELRIKAADAFYKIKHTLEEINTFI
SGINPDPDLRLSPENGNVAFASTDMHWCFTLRSFAQMYADTYGSLDVDAFADRLWGDIYF
DAETRKFTRKQADPEQNRTFVHFILEPLYKLYSQVLSEETDNLKGTLEGLGIHLKPVLYK
MDVRPLLKAVLDQFFGPAKGLVDMIVEHIPSPLAATADKVRRTYTGPMNSELVQAMEKCD
PEGPLMISVTKLYHTTDAQSFRAFGRVISGTLRKGVDVKVLGEGYSPEDEEDMVKAVVED
IWISEARYFVPAEEVVAGNLVLLGGVDASISKTATIAATNLEDDLYIFRPIKHMTQSVLK
IAIEPIAPSELPKMLSGLRSINKSYPLVATKVEESGEHVLIGTGELYLDCVMHDLRRLFS
EIEIKVSDPVTKFCETVLETSALKCYADTPNKKNRITMIAEPLERGIAEDVESGRVTMRM
TPKERGKFFEEKYQWDLLASRSIWAFGPDDSGPNVLLDDTLPSQVDKKLLGTVKQHITQG
FQWGAREGPLCDEPMRNVKFRILDASLAQEPIFRGGGQIVPTARRVCYSSFLMATPRLME
PVYFVEVQAPADCISAVYTVLARRRGHVTQDIPKAGSPLYTVKALIPVIDANGFETDLRT
ATQGQAFCLQMFDHWSIVPGDPTDTSIKLRPLEPASGQALARDLVLKTRRRKGLGDQIAV
SKYLDDEFVLALSASGHADLLG
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctttgaagactacgatgaattcggcaattacattggcgcggacattgactcg
gacgatgaagaggagatctctcagccgtacgcgcagcagcagcgggaaccgtctgcccaa
ccacttgagggcttcgacgatgtgcttatggaagctgccgacgagggtgcgctgatgcag
gtagacgagcccgtacataatgccgtaattctacacgaggacaagcagtattatcctact
gcccaacaagtttatggcgaggatgtcgagaccctggtccaggaagaagatgcccaaccg
ctgtcagagcccattgttgctcctatcaaggttcgcagatggacggtggaggagaagaac
atgccagaaacgcgcttcgacaaaggattccttctgcagatgactggattcaccgagttt
gtgcggaatgtcgcggtagtcggccatcttcaccatggcaaaactgcgttgatggatatg
ctagtcttcgagacgcataagatggactgggattctgacaatcagacccggtacaccgac
acccatgttctgtcaagagaacgaggtatctccatcaagtcctcgcccatgtcgttgatt
cttcagaacagctacgggaagtcacacctcattcacctcattgacacacctggacacgtg
aacttcgttgatgaggttgcgcccgctatacggctggtggatggtgtcgtcttagtggtt
gatgtcgtcgagggggttatgtgcaacacagaagctatcatccgccattgcttgcaagag
ggtgtgaagatgaccctcgtcattaacaagattgaccgcctcatacttgaactacgtatc
aaggctgcagatgcgttttacaagatcaagcacaccctcgaggaaattaataccttcatc
agtggtatcaaccccgatcctgatctccgtctcagcccagagaacggcaatgtggcgttc
gccagcaccgacatgcactggtgtttcaccctgcggtcgtttgcacagatgtatgcggac
acctatggctctctggacgttgacgcgttcgcagaccgcctctggggggatatttacttc
gatgccgagactcgtaagttcacccgcaagcaagcggatcccgagcagaatcgaaccttt
gtccacttcattctcgaaccgctctacaaactctacagccaagtgctaagtgaagagacc
gacaatctgaagggcactctcgagggcctcggcattcacctcaagccggtcttgtataag
atggatgtacgacccttattgaaagccgtgcttgaccagttctttgggccggcaaagggc
ttggtggacatgatcgtggaacatatcccgtcgcccctcgcagctactgctgacaaggtt
cgacgaacatatactggtcccatgaacagcgagctagtgcaggccatggagaaatgtgac
ccggaaggcccattgatgatcagcgttaccaaattataccatacgaccgatgcccagtca
ttcagggcattcggccgtgtcatcagcggtaccctcaggaaaggtgtcgatgtcaaagtc
ctcggtgaaggctactcgcctgaagatgaggaagacatggtcaaggccgtcgttgaggat
atctggatcagcgaggcgcggtacttcgtccctgcggaggaagtcgtcgccggtaacctt
gttttacttggtggtgtcgacgcatcgatctcgaagactgcaacgattgcagcgacgaac
cttgaggacgatctctacatcttccgaccaattaagcacatgacgcagtctgttctcaag
atcgctatagagcccattgcaccgtcggagctgcccaaaatgttgtctggtctccggagc
attaacaaatcgtaccccttggttgcgacaaaggtcgaggagagcggtgagcatgttctg
atcggtacgggtgagctgtacctcgactgcgtcatgcacgatctacggcgactgttctcg
gagattgagatcaaagtctcggaccctgttactaagttctgcgagactgtactcgagact
agtgccttgaaatgctatgcagacacaccaaacaagaaaaaccggattaccatgatcgcc
gagccactggaacgcggtattgcagaggatgtcgagagcggccgcgttaccatgcgtatg
actcccaaagagcggggcaagttcttcgaggagaagtaccaatgggatttgcttgcgtca
cggtctatctgggcgtttggtcccgacgacagcggcccgaatgtcttgcttgatgacact
ctgccgtcgcaggtggacaagaaattgctcggtaccgttaagcagcatattacgcaaggc
ttccagtggggtgcgcgtgaaggccctctttgcgacgagcctatgcggaatgttaaattc
cgaatccttgacgcaagcctggcacaagagccaattttccgaggtggtggacagattgta
cccacggcacgtcgtgtttgctactcatcgttcctgatggcaacgccgcgtctaatggaa
ccggtctactttgttgaagtacaagcgcccgcagactgcatatcggcggtttacaccgtg
ttggcacgccggcgtggtcacgtcacacaagatatcccgaaagccggctctccattgtac
actgtcaaggctctgatccctgtcattgacgcaaacggcttcgagactgacctccggacg
gcgacgcaaggtcaggcgttctgcttgcagatgttcgaccactggtcgattgtgcccggt
gatcccaccgacacgagcattaagcttcggccgcttgagcctgcatctggtcaggcgttg
gcgagggacctcgtgctcaagacgagaaggcgaaaaggtctaggcgaccaaattgccgtg
tcaaaatacttggacgacgaattcgtgctcgcgctgtctgcgtctggacatgcggatctt
ttaggctga
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