KEGG   Pseudomonas chlororaphis PCL1606: PCL1606_31290Help
Entry
PCL1606_31290     CDS       T03768                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pcz  Pseudomonas chlororaphis PCL1606
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pcz00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    PCL1606_31290
Enzymes [BR:pcz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PCL1606_31290
DNA repair and recombination proteins [BR:pcz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PCL1606_31290
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
3412757..3415366
Genome map
AA seq 869 aa AA seqDB search
MAKPLSEYQRKRNFAITSEPAADPPAARTGKAASLRFVIQKHAARNLHYDFRLELGGTLK
SWAVPKGPSLDPTHKRLAVHVEDHPLGYGRFEGSIPAGQYGAGDVIVWDHGVWQPHDDPE
AGYRAGKLKFTLIGEKLGGDWALVRTHLRGSGDKEQWLLIKEQDAQARPSAEYDVVRALP
ESVLSGATVGEGNSRPAKPAAKKPSRQTPGKTPEQAPERTPEKAPQKASQKAPKRSAIAL
PEHLTPQLATLVEKAPAGDWRYEIKFDGYRILARIDASGVRLLTRNGHDWTARLPLQAKA
LAALKLKGCWLDGEVVVLNDKGLPDFQALQNAFDIGRSLDIIYYLFDAPFLRGEDLRETP
LEARRKALKEALEGNSSKLLRFSEAFAAHHNDILESACALSLEGVIGKRAGSFYVSRRSA
DWIKLKCRLRQEFVIIGHTPPQGSRSGFGALLLGVHEDGRLRYAGRVGTGFNQQTLKQLH
ERLQGLARASSPLDTPLTAAQARGARWVEPQLVAEVEFAEWTREQVVRQAAFIALRSDKP
ASEIVREQPLPPKALAARSSGTSPEPRKHNVGASVAGVKITHPERVIDPQSGTTKLQLAQ
FYASIEAQILPYLRDRPVSLLRAPEGVEGEQFFQKHAEHMAIPHIRHLDPALDPGHARLM
EIDSGPALIGAVQMGTVELHTWGATHDRIDTPDLFVLDLDPDPALPWKSMLEATHLTLSV
LDELGLQAFLKTSGGKGMHLVVPLARKAGWDSVKLFAKAIAQFMAHQLPERITATMGPKN
RVGKIFVDYLRNARGASTVAAYSVRARPGLPVSVPIARDELDDIRHAQQWNVANLQQRLE
GLGEDPWQGYAHRQRISAKMWRQLGMDPP
NT seq 2610 nt NT seq  +upstreamnt  +downstreamnt
atggctaaacccttgagtgaataccagcgcaagcgcaacttcgccatcacctcggaaccc
gctgccgatccgcccgccgcgcgcaccggcaaggccgcctccctgcgcttcgtgatccag
aaacatgcggcgcgcaacctgcactacgactttcgcctggaactgggcggcaccctgaaa
agctgggccgtgcccaagggcccgagcctggacccgacacacaagcgcctggcggtgcat
gtcgaggatcaccccctgggctacggccggttcgagggcagcatccccgccggacaatac
ggcgccggcgatgtgatcgtctgggaccacggcgtctggcagccccacgacgaccccgag
gccggctaccgggccggcaagctcaagttcactctgatcggcgagaagctcggcggcgac
tgggccctggtgcgtacccacctgcgcggcagcggcgacaaggaacaatggctgctgatc
aaggagcaggacgcccaggcgcggccgagcgccgagtacgatgtggtccgggccctgccc
gaaagcgtgctcagcggcgccacggtcggcgaaggcaactcccggcccgccaagccggcg
gcgaaaaaaccgtcgcgacagacaccgggcaaaacgccggagcaagctccggagagaacc
ccggagaaagccccgcaaaaagcctcgcagaaagccccgaaacgctcggccatcgccctg
cccgagcacctcacgccacaactggcgaccctggtggaaaaagcccccgctggcgactgg
cgctacgagatcaagttcgacggctaccggatcctcgcccgcatcgacgccagcggcgtg
cgcctgctgacccgcaacggccacgactggaccgcgcgcctgcccttgcaagccaaggcc
ctggccgcgctgaagctcaagggctgctggctggacggcgaagtggtggtgctcaacgac
aagggcctgccggatttccaggccctgcagaacgccttcgatatcggccgcagcctggac
atcatctattacctgttcgacgcgccgttcctgcgcggcgaggacctgcgcgaaacgccc
ctggaagcgcgacgcaaggcgctcaaggaagcgctggagggcaattcgagcaagcttctg
cgcttctccgaggcctttgccgcccaccacaacgacatcctcgaaagcgcttgcgccctg
tcgctggagggggtcatcggcaagcgcgccggcagcttctacgtatcgcgccgcagcgcc
gactggatcaagctcaagtgccggctacgccaggagttcgtgatcattggccacaccccg
ccgcaaggttcgcgcagcggcttcggcgccctgctgctgggggtccatgaggatggccgg
ctgcggtacgccggccgggtgggcaccggtttcaaccagcagaccctgaaacagctgcac
gaacgcctgcaagggctcgcgcgtgcctcctcgccgctggacacgccgttgaccgcggcc
caggcccgcggcgcgcgctgggtcgagccgcagctggtggccgaagtcgagttcgccgag
tggacccgcgaacaggtggtgcgccaggcggcgttcatcgccttgcgcagcgacaagccg
gccagcgagatcgtccgcgaacagccgctgccgcccaaggcgcttgccgcccgcagcagc
ggcaccagccccgagccgcgcaagcacaacgtcggcgccagcgtggccggggtgaaaatc
acccatcccgaacgcgtcatcgacccgcagtccggcaccaccaagctgcaactggcgcag
ttctacgccagcatcgaggcacagatcctgccgtacctgcgcgaccggcccgtgtcgttg
ctacgcgcgcccgaaggggtggaaggcgagcagttcttccagaaacacgccgaacacatg
gccattccccatatccggcacctggacccggcgctggatcccggccacgcccggctgatg
gaaatcgacagcggcccggcgctgatcggcgcggtgcagatgggcaccgtcgagctgcac
acctggggcgcgacccacgaccggatcgataccccggacctgttcgtcctcgacctcgac
ccggacccggccctgccctggaaaagcatgctggaggccacccacctgaccctttcggta
ctcgacgagctgggcttgcaggcgttcctcaagaccagcggcggcaagggcatgcacctg
gtcgtgccgctggcgcgcaaggccggctgggacagcgtcaagctgttcgccaaggcgatc
gcacagttcatggcgcaccagttgccggaacgcatcaccgccaccatgggcccgaagaat
cgggtcgggaaaatttttgtcgattacctgcgcaacgcccgcggcgccagcaccgtggcc
gcctattcggtacgggcgcgcccgggcctaccggtctcggtgccgatcgcgcgcgatgaa
ctggatgacatccgccatgcccagcaatggaacgtggcgaacctgcaacagcgcctggag
gggctgggggaagatccgtggcagggctacgcccatcggcaacggatcagcgcgaagatg
tggcggcagttggggatggatccgccttga

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