Planococcus donghaensis: BCM40_09370
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Entry
BCM40_09370 CDS
T04451
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pdg
Planococcus donghaensis
Pathway
pdg03410
Base excision repair
pdg03430
Mismatch repair
pdg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BCM40_09370
03430 Mismatch repair
BCM40_09370
03440 Homologous recombination
BCM40_09370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdg03400
]
BCM40_09370
DNA repair and recombination proteins [BR:
pdg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BCM40_09370
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BCM40_09370
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BCM40_09370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
DSPc
Motif
Other DBs
NCBI-ProteinID:
ANU23570
UniProt:
A0A1C7EI71
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All DBs
Position
1367996..1370338
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AA seq
780 aa
AA seq
DB search
MIESKKRWRLTTPDEQRVQDIQNELNISSVLAKILVTRGLNTAEAARSFMNMDVSGMHDP
YLMKDMDIAIARIREAIDKQEKVVVYGDYDADGVTSTTVMMTALQDLGADVSFMIPNRFK
HGYGPNTELFKQAFDNGTKLIVTVDNGISGIEQVDFANSLGMDVIISDHHDIGEQLPNAL
AIVHPRHPEGHYPFGELAGVGVAFKMAHALYEEVPDHLIELTAIGTVADLVPLHGENRVF
VKEGLAALIDSPSPAIGALCEVAGIKQQDITEETIGFMFGPRINAIGRLQDADPAVQMFL
TEDPAEARSLASGLDVLNKERQAIVKQISEEAMQQVEQRYPEGVPRVLVVAQEGWNPGVV
GIVASKLTEKFYRPSIVLSLNPENGKAKGSARSIDGFHLYNELAKNRDILPHFGGHPMAA
GMTLEASDVDELRERLIEQAETSLTAEDLMPVIDIDIPLRLDEIDITAIESMRSLAPFGM
GFAKPKFYLEGVHVSSIRKIGAAQNHLKMELTQHAASLDAVGFGLGTVGDELTPDVKIDV
IGDLQVNEWNGRKKPQLMVEDVRTDQWQLFDIRGIRQVSRWSKLIPTQNQVFLAFKEETP
ALFQSFLPQPICTVAQLDALSTSKDHLVLLDLPESEEQLAEVLAKLKPKRIYAHFHAKDS
QYFEQIPTREQFKWLFAFIKKRGSFDFNKHCDELAKHKGWTRESLFFMLQVFFELGFVTL
NNGITEIAQSPSKQDLSEAPIYKRREQQIALEQKLLYASFKDLKEWFDTKVSAKEEEIWI
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgatagaatctaaaaaaagatggcgtttaacaacgccagatgaacaacgagtccaagac
attcagaacgaattgaatatatcatctgtgctagctaaaattttagtgacacgtggttta
aatacagcggaagcagcacgctcatttatgaacatggatgttagtggtatgcacgaccct
tatttaatgaaagacatggacatcgccattgcacgaattcgagaagccattgataagcaa
gaaaaagttgtggtgtatggcgattacgatgcggatggtgtgacgagtacgacggttatg
atgactgcgctacaagatttaggggccgatgtgtcttttatgataccgaatcgctttaag
catggttacggacccaatacggaattgttcaaacaagcttttgataatggaaccaaatta
atcgttactgtcgataacggcatttctggcatcgagcaagtggactttgccaacagcttg
ggcatggatgttattattagtgatcaccatgatattggagagcaattaccgaatgcgtta
gcaattgttcacccacgtcatcccgaaggacattatccttttggcgaactcgcgggagtt
ggtgtcgcgtttaaaatggctcacgcgctatatgaagaagttccagatcacttgatcgag
ttgaccgcgattgggacagtggccgatttggtgccgcttcacggagaaaaccgtgtgttt
gtaaaagaaggattggcggcattaattgattcaccgagtccggcgattggagctctttgt
gaagtagcgggtatcaaacaacaagacataacagaagaaacaattggctttatgttcggt
ccacgcattaacgccattggacgcctgcaagatgcagatccagctgttcaaatgttctta
acagaagaccctgcagaagcgcgttcgttagcttctggactagatgtgttaaacaaagaa
cggcaagccattgtaaaacaaatttcagaagaagcgatgcaacaagttgaacaacgttat
ccagaaggcgttccgcgagtactagttgtcgcacaagaaggttggaatccaggggtagtt
ggaattgtggcgtcgaaactgacagagaaattttatcgtccgtcgattgttttgtcgctt
aatccagaaaacggcaaagcaaaaggttctgcacgaagcatcgatggttttcatttgtat
aacgaactcgctaaaaaccgggatattttgcctcattttggaggacaccctatggcagcg
gggatgacacttgaagccagtgatgtggatgagttgcgcgaacggttgatcgagcaagca
gaaacgagtttaacagcagaagacttaatgcctgttattgatattgatattccgttgcgt
ttagacgaaatcgacattacggctattgaatcgatgcgttcacttgcgccatttgggatg
ggttttgctaaaccgaagttttaccttgaaggtgtacatgtatcatcgattcgtaaaatt
ggtgcggctcaaaatcacctgaaaatggaattaacgcaacatgcagcctcgcttgacgca
gtgggctttgggctcggtactgtaggagatgagttaacaccagatgtgaaaattgatgtg
attggtgatttgcaagtaaacgagtggaacggtcgtaaaaaaccacagctaatggtggaa
gatgttcggacagatcaatggcaattattcgatattcgtggcattcgccaagtatcacga
tggtcaaagctgataccgactcaaaaccaagtgtttttagcgtttaaagaagaaacaccg
gctttatttcaatcgtttttaccgcaaccgatttgcacagtggctcaactagatgctttg
tctactagcaaagatcatttagtgctgctggacttaccagaatcagaagagcaactagca
gaggttttggcaaagttaaaaccaaaacgaatttatgcgcattttcatgccaaggactct
cagtatttcgagcaaattccaacgcgtgaacaattcaaatggttgttcgcttttattaaa
aagcggggatcatttgactttaataaacattgtgacgagttagcaaaacacaaaggttgg
acccgcgaatcattatttttcatgctgcaggtgttttttgaacttggttttgttacactt
aacaatggcattaccgagattgcgcaatcgccaagcaaacaggatttatcagaagctccg
atttacaaacgtcgtgagcagcagattgccttagagcaaaagcttttgtatgcgtctttt
aaagatttaaaagagtggttcgatacgaaagtatctgccaaggaggaagaaatatggatt
taa
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