Pediococcus damnosus: ADU72_2152
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Entry
ADU72_2152 CDS
T04321
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pdm
Pediococcus damnosus
Pathway
pdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADU72_2152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdm03019
]
ADU72_2152
03400 DNA repair and recombination proteins [BR:
pdm03400
]
ADU72_2152
Enzymes [BR:
pdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ADU72_2152
Messenger RNA biogenesis [BR:
pdm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ADU72_2152
DNA repair and recombination proteins [BR:
pdm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ADU72_2152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Polysacc_deac_2
Helicase_C_2
Peptidase_M1
Motif
Other DBs
NCBI-ProteinID:
AMV68073
UniProt:
A0A0R2HLI4
LinkDB
All DBs
Position
complement(2156791..2158257)
Genome browser
AA seq
488 aa
AA seq
DB search
MKIHNDQIYKTLQTKFGFSEFKSGQLEIIQRLCNRKNVLAVLPTGTGKSLIYQLFGYLIN
RPIIVISPLISLIDDQVARLNRLGEKRVIGLTSKLDHNQRQFALKHLRNYRFIYVSPEMA
DQPDVRLELDQINCGLFVIDEAHCLSQWGPDFRPAYLKLKDLVRHIGSPTTLMLTATAKP
AVRKDIIEKMGFAVSDVIQVVHSVDRPNIFLDVEHCASLTEKNEKLLDLISVLKGSGIIY
FSSKKIANQISELIAQKTGRTTAAYHADIDLQDRYRIQQQFMHGNIELICATSAFGMGID
KDNVRFVIHYHMPGNLENYLQEIGRAGRDQRASIAILLYAPGDEYIPSTLNLMGLPSAAN
IQTFFHQPESRASFDDDQRQLLTYYHDQRKTSEDVTQIFQTRQLAKQTSLVSMLDYINET
DCLRTKLLAYFDEQFNEHSQNCCATDQALEKIKQLHLDTVPNKQDVSDVKKQLVPWQMRL
EQLFSSKK
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcataatgatcaaatttacaaaacacttcaaacaaaatttggcttttcagaa
tttaaatcaggtcaattagaaatcattcaacgactttgtaaccgaaaaaatgtgctagcc
gttctgccaacaggcactggtaaatccttaatttatcagctatttgggtacttaattaat
cggccgatcattgtaatttcaccgttaatttctttaattgatgatcaagttgctcgttta
aatcgcctaggggaaaagcgcgtgattggcctaacttcgaaattagatcacaatcaacgc
cagtttgccttaaaacatttacgtaattatcgttttatatatgtttctccagaaatggcg
gaccaaccagatgttagattagagctagaccaaattaattgtggtttatttgtcatagac
gaagcacattgtctatcacagtgggggcctgattttcgcccagcttatttaaaactaaaa
gatctcgttcgccacataggatcaccgactactttgatgcttacggcaacagccaaacca
gctgtcagaaaagatattatcgaaaaaatgggatttgcagtatcagatgtcatacaagtt
gttcattccgttgatcgtccaaatatttttctagacgttgaacactgcgcgtcattaaca
gaaaaaaacgagaaattattggatttaatctcagttctcaaaggatctggaattatttat
ttttctagcaaaaaaattgccaatcaaatttctgaattaattgcacagaagactggacga
acaacggctgcataccatgccgatatcgatttacaagatcgatatcggattcaacaacaa
tttatgcatggaaatattgaactaatatgtgcgaccagtgcctttggtatggggatcgat
aaagacaacgttcgttttgtaattcattaccacatgccagggaacctagaaaattatctc
caagaaattggaagagctggacgtgatcaaagggccagtatcgctattttactttacgct
ccgggtgatgagtatatcccaagtaccctaaacttaatgggactaccaagtgctgccaat
attcaaacattttttcatcaaccagagagtcgtgcttcgtttgatgatgatcaaaggcaa
ttacttacctattaccatgatcaaaggaaaacatcagaggacgttactcaaatttttcaa
acgcgtcaattggcaaaacaaactagtctggtaagtatgctagattacattaacgaaacc
gattgtttacggacaaaattacttgcttattttgatgaacaatttaatgaacattcacaa
aattgttgtgcaactgatcaagcgttagaaaaaattaaacaacttcatttagatacagtc
cctaacaaacaagatgtgtcagatgtaaaaaaacaattagttccatggcaaatgcgccta
gaacaattattttcatccaaaaaataa
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