Pseudonocardia dioxanivorans: Psed_0002
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Entry
Psed_0002 CDS
T01479
Name
(GenBank) DNA polymerase III, beta subunit
KO
K02338
DNA polymerase III subunit beta [EC:
2.7.7.7
]
Organism
pdx
Pseudonocardia dioxanivorans
Pathway
pdx03030
DNA replication
pdx03430
Mismatch repair
pdx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Psed_0002
03430 Mismatch repair
Psed_0002
03440 Homologous recombination
Psed_0002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdx03032
]
Psed_0002
03400 DNA repair and recombination proteins [BR:
pdx03400
]
Psed_0002
Enzymes [BR:
pdx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Psed_0002
DNA replication proteins [BR:
pdx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Psed_0002
DNA repair and recombination proteins [BR:
pdx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Psed_0002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_beta
DNA_pol3_beta_3
DNA_pol3_beta_2
Motif
Other DBs
NCBI-ProteinID:
AEA22287
UniProt:
F4D246
LinkDB
All DBs
Position
2771..3901
Genome browser
AA seq
376 aa
AA seq
DB search
MKFRVERDVLADAAAWVARSLPARPPVPVLGGVLIEGGGDPGAETLTVSGFDYETSARVE
LDATVGDPGQVLVSGRLLADITRALPSKPVDLVVDGSRATINCGNSRFSLPTMPVEDYPQ
LPAMPQRAGSVAADVLASAVAQVAVAAGRDDTLPMLTGVRLEIEGSRLTLAATDRFRLAV
RELDWEPEDPSASTAVLIPARTLADVAKALSGSGTVEIALSAGDGMLGMTGSGRRATTRL
LDAEFPRFRQLIPAESTTNAEIEVATLVEAIKRVALVADRVAQIRLEFGEDGLRLAAGGD
DVGSAEEEIPCALQGEPLTIAFNPSYLLDALGALHTERVQLSFTTPNRPALARPVVADDA
ANPGYLHLLMPVRLPG
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccgggtcgaacgcgacgtcctggccgatgccgcggcctgggtggcccgcagc
ctgcctgcgcggccgccggtcccggtcctgggcggcgtcctgatcgagggtggcggcgac
cccggcgcggagacgctcacggtgtcgggcttcgactacgagacgtcggcccgggtcgag
ctcgacgcgacggtcggcgacccgggccaggtgctcgtctccggccgcctgctcgccgac
atcacccgcgcgctgccgtcgaagccggtcgacctggtggtggacgggtcccgcgcgacg
atcaactgcggcaacagccggttcagcctcccgaccatgccggtcgaggactacccgcag
ctgccggcgatgccgcagcgggcgggctcggtcgcggccgatgtgttggcctcggccgtc
gcgcaggtcgccgtcgcggccggccgcgacgacacgctgccgatgctcaccggcgtgcga
ctggagatcgagggctcgcggctcacgctcgcggcgaccgaccgcttccggctcgccgtc
cgcgaactcgactgggagccggaggacccctcggcgtcgaccgccgtgctgatcccggcc
cggacgctcgccgacgtcgccaaggcgctctccggctccggcaccgtggagatcgcgctg
tcggccggggacggcatgctcgggatgaccggcagcggccggcgggcgaccacccggctg
ctcgacgcggagttcccgcgcttccgccagctgatcccggccgagagcaccacgaacgcc
gagatcgaggtggccacgctcgtcgaggcgatcaagcgcgtcgcgctggtggccgaccgg
gtcgcccagatccggctcgagttcggcgaggacggcctgcggctggcggcgggcggcgac
gacgtcggaagcgccgaggaggagattccctgtgcgctgcaaggggagccgctgaccatc
gcgttcaacccgtcctacctgctcgacgcgctcggcgcgctgcacaccgagcgcgtgcag
ctctccttcaccacgccgaaccggccggcgctggcgcgtcccgtcgtggcggacgacgcc
gcgaaccccgggtacctgcacctgcttatgccggtgcggctgcccggctga
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