Pseudonocardia dioxanivorans: Psed_5435
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Entry
Psed_5435 CDS
T01479
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pdx
Pseudonocardia dioxanivorans
Pathway
pdx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Psed_5435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdx03021
]
Psed_5435
03400 DNA repair and recombination proteins [BR:
pdx03400
]
Psed_5435
Enzymes [BR:
pdx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Psed_5435
Transcription machinery [BR:
pdx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Psed_5435
DNA repair and recombination proteins [BR:
pdx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Psed_5435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEA27568
UniProt:
F4CWF0
LinkDB
All DBs
Position
complement(5792072..5795974)
Genome browser
AA seq
1300 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVNTELRHQDLSTLENEMTVERKKVEQRRDTDLEARAQKLEAD
LAELEAEGAKSDVRRKVKEGGEREMRQLRDRAQRELDRLDEIWTTFTKLDVQQLIADEGL
YRELYDRYGDYFTGSMGAEAIQKLLETFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA
AFQSTGNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
SQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQSEARVLMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRERPGATGDGN
IYGSVAEAIMAYDRKVLHLQAPIKIRLPGVTPVAGVELEDGEVWLAETTLGRVLFNELLP
AGYPFVNEPLPKKRQAAIINDLAERYSMTEVAQCLDRLKDAGFYWATRSGVTMAIDDVVV
PPNKQEILDGYEAKADQVNKRYQRGALSHQERNDEMVKIWTQASEEVAKAMEDNFPEDNP
IPTIVKSGAAGNMTQVRQLAGMRGLVANPKGEYIPRPIKANFREGLSVLEYFISTHGTRK
GLADTALRTADSGYLTRRLVDVSQDVIVREIDCGTSRSVAMAVTEETSDGRLIPHRYIRT
SVYARCSAEEVVGPDGEVIVAKGGDLGDPALDALVAAGVRQIKVRSALTCESATGICAMC
YGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPRVTELFEA
RVPKGKAPIADVDGRIRIEDGDRFWKITLTPDDGGEEIVYEKLSKRQWLAMTTVDGQERP
LADGDHVQVGQLLLEGTADPHEVLRVMGPREVQLHLVREVQKVYRTQSVDIHDKHIEVIV
RQMLRRVTIIDSGATEFLPGALAERGEFESENRRVVAEGNEPASGRPVLMGITKASLATE
SWLSAASFQETTRILTDAAINGKRDKLVGLKENVIIGKLIPAGTGIGRYRNIQVQPTEEA
RAAAYALPNYDDGYYSPDVFGTGTGAAVPLDDYDFGRDYR
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcgcatcggcctggccaccgccgaggacatc
cgccagtggtcgcacggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgttgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccg
gtcacgcacatctggtacttcaagggcgtcccgagccggctgggctacctgctcgacctg
gctcccaaggacctcgagaagatcatctacttcgccgcgtacgtgatcacctcggtgaac
acggagctgcgccaccaggacctctcgacgctcgagaacgagatgaccgtcgagcgcaag
aaggtcgagcagcgccgcgacaccgacctggaggcccgcgcccagaagctcgaggccgat
ctggccgagctcgaggccgagggcgccaagagcgacgtccgccgcaaggtcaaggagggt
ggcgagcgcgagatgcgccagctccgcgaccgggcgcagcgcgagctcgaccggctcgac
gagatctggacgacgttcaccaagctcgacgtccagcagctgatcgcggacgaggggctc
taccgcgagctctacgaccgctacggcgactacttcaccggctccatgggtgccgaggcg
atccagaagctgctggagaccttcgacatcgaggccgaggccgagaacctgcgcgagacg
atccgctcgggcaaggggcagaagaagctgcgcgccctcaagcggctcaaggtcgtcgcc
gcgttccagtccaccggcaactcgccgatgggcatggtgctcgactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgccacgtccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgtcgcggccggccggtgaccggtccgggcaaccgcccgctcaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgcggccgc
tcgcaggtgtgggacgtgctcgaggaggtcatctccgagcaccccgtgctgctcaaccgc
gcaccgacgctgcaccgcctcggcatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcagtccgaggcccgggtgctgatgctc
tcgagcaacaacatcctctcgcccgcgtcgggccggccgctggccatgccgcgtctggac
atggtcacggggctgttccacctgacccgcgagcgccccggcgcgaccggcgacggcaac
atctacggctcggtcgccgaggcgatcatggcctacgaccgcaaggtcctccacctgcag
gcgccgatcaagatccggctccccggggtgacgccggtcgccggcgtcgagctcgaggac
ggcgaggtctggctggcggagacgacgctgggccgtgtgctgttcaacgagcttctcccg
gccgggtacccgttcgtcaacgagccgctgcccaagaagcgtcaggccgcgatcatcaac
gacctggccgagcggtactcgatgaccgaggtcgcgcagtgcctcgaccgcctcaaggac
gccggcttctactgggccacccggtccggcgtcacgatggcgatcgacgacgtcgtggtc
ccgccgaacaagcaggagatcctcgacggctacgaggccaaggccgaccaggtcaacaag
cgctaccagcgtggtgcactcagccaccaggagcgcaacgacgagatggtcaagatctgg
acccaggcgtccgaagaggtcgccaaggccatggaggacaacttccccgaggacaacccg
atccccacgatcgtgaagtccggggcggcgggcaacatgacccaggtccggcagctcgcc
ggtatgcgtggtctggtcgccaaccccaagggtgagtacatcccccgcccgatcaaggcc
aacttccgtgagggcctgtcggtgctggagtacttcatctccacccacggcacccgcaag
ggtctggcggacaccgcgctgcggaccgccgactccggctacctgacccgtcgtctggtc
gacgtgtcgcaggacgtcatcgtccgcgagatcgactgcggcacctcgcgctcggtcgcc
atggccgtcaccgaggagaccagcgacggccgcctcatcccgcaccgctacatccgcacg
tcggtgtacgcgcgctgctcggcggaggaggtcgtcggtcccgacggcgaggtcatcgtc
gccaagggtggcgacctgggcgacccggcgctcgacgccctcgtggcggcaggtgtccgg
cagatcaaggtgcgcagcgccctgacctgcgagtccgccacgggcatctgcgcgatgtgc
tacggccgctcgatggccaccggcaagctggtcgacgtcggcgaggccgtcggcatcgtc
gccgcgcagtcgatcggtgagcccggtacgcagctgacgatgcgtacgttccaccagggt
ggcgtcgcgggcgacgacatcacgaccggtctgccccgtgtcaccgagctcttcgaggcc
cgggtccccaagggcaaggcgccgatcgccgacgtcgacggccgcatccgcatcgaggac
ggcgaccgcttctggaagatcaccctcaccccggacgacggcggcgaggagatcgtctac
gagaagctgtccaagcggcagtggctggcgatgaccacggtcgacggccaggagcgtccg
ctggccgacggcgaccacgtccaggtgggccagctgctcctcgagggcacggccgacccg
cacgaggtgctgcgtgtcatgggcccgcgcgaggtgcagctgcacctggtgcgtgaggtg
cagaaggtgtaccgcacgcagagcgtggacatccacgacaagcacatcgaggtcatcgtc
cggcagatgctgcgccgggtgacgatcatcgactcgggtgccacggagttcctgccgggt
gcgctcgccgagcgcggcgagttcgagtcggagaaccgtcgggtggtcgccgagggcaac
gagccggcctccggccgcccggtgctcatggggatcaccaaggcctcgctggcgacggag
tcgtggctgtccgcggcctcgttccaggagaccacccgcatcctcaccgatgccgcgatc
aacggaaagcgcgacaagctcgtcgggctcaaggagaacgtgatcatcggcaagctgatc
ccggccggtacgggcatcggccggtaccgcaacatccaggtccagccgacggaggaggcc
cgcgcggccgcctacgcgctgccgaactacgacgacggctactacagccccgacgtgttc
ggcacggggaccggtgccgcggtgccgctggacgactacgacttcgggcgcgactaccgg
tag
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