KEGG   Pseudonocardia dioxanivorans: Psed_5435
Entry
Psed_5435         CDS       T01479                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pdx  Pseudonocardia dioxanivorans
Pathway
pdx03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pdx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Psed_5435
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdx03021]
    Psed_5435
   03400 DNA repair and recombination proteins [BR:pdx03400]
    Psed_5435
Enzymes [BR:pdx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Psed_5435
Transcription machinery [BR:pdx03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Psed_5435
DNA repair and recombination proteins [BR:pdx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Psed_5435
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AEA27568
UniProt: F4CWF0
LinkDB
Position
complement(5792072..5795974)
AA seq 1300 aa
MLDVNFFDELRIGLATAEDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVNTELRHQDLSTLENEMTVERKKVEQRRDTDLEARAQKLEAD
LAELEAEGAKSDVRRKVKEGGEREMRQLRDRAQRELDRLDEIWTTFTKLDVQQLIADEGL
YRELYDRYGDYFTGSMGAEAIQKLLETFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA
AFQSTGNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
SQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQSEARVLMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRERPGATGDGN
IYGSVAEAIMAYDRKVLHLQAPIKIRLPGVTPVAGVELEDGEVWLAETTLGRVLFNELLP
AGYPFVNEPLPKKRQAAIINDLAERYSMTEVAQCLDRLKDAGFYWATRSGVTMAIDDVVV
PPNKQEILDGYEAKADQVNKRYQRGALSHQERNDEMVKIWTQASEEVAKAMEDNFPEDNP
IPTIVKSGAAGNMTQVRQLAGMRGLVANPKGEYIPRPIKANFREGLSVLEYFISTHGTRK
GLADTALRTADSGYLTRRLVDVSQDVIVREIDCGTSRSVAMAVTEETSDGRLIPHRYIRT
SVYARCSAEEVVGPDGEVIVAKGGDLGDPALDALVAAGVRQIKVRSALTCESATGICAMC
YGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPRVTELFEA
RVPKGKAPIADVDGRIRIEDGDRFWKITLTPDDGGEEIVYEKLSKRQWLAMTTVDGQERP
LADGDHVQVGQLLLEGTADPHEVLRVMGPREVQLHLVREVQKVYRTQSVDIHDKHIEVIV
RQMLRRVTIIDSGATEFLPGALAERGEFESENRRVVAEGNEPASGRPVLMGITKASLATE
SWLSAASFQETTRILTDAAINGKRDKLVGLKENVIIGKLIPAGTGIGRYRNIQVQPTEEA
RAAAYALPNYDDGYYSPDVFGTGTGAAVPLDDYDFGRDYR
NT seq 3903 nt   +upstreamnt  +downstreamnt
gtgctcgacgtcaacttcttcgacgagctgcgcatcggcctggccaccgccgaggacatc
cgccagtggtcgcacggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgttgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccg
gtcacgcacatctggtacttcaagggcgtcccgagccggctgggctacctgctcgacctg
gctcccaaggacctcgagaagatcatctacttcgccgcgtacgtgatcacctcggtgaac
acggagctgcgccaccaggacctctcgacgctcgagaacgagatgaccgtcgagcgcaag
aaggtcgagcagcgccgcgacaccgacctggaggcccgcgcccagaagctcgaggccgat
ctggccgagctcgaggccgagggcgccaagagcgacgtccgccgcaaggtcaaggagggt
ggcgagcgcgagatgcgccagctccgcgaccgggcgcagcgcgagctcgaccggctcgac
gagatctggacgacgttcaccaagctcgacgtccagcagctgatcgcggacgaggggctc
taccgcgagctctacgaccgctacggcgactacttcaccggctccatgggtgccgaggcg
atccagaagctgctggagaccttcgacatcgaggccgaggccgagaacctgcgcgagacg
atccgctcgggcaaggggcagaagaagctgcgcgccctcaagcggctcaaggtcgtcgcc
gcgttccagtccaccggcaactcgccgatgggcatggtgctcgactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgccacgtccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgtcgcggccggccggtgaccggtccgggcaaccgcccgctcaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgcggccgc
tcgcaggtgtgggacgtgctcgaggaggtcatctccgagcaccccgtgctgctcaaccgc
gcaccgacgctgcaccgcctcggcatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcagtccgaggcccgggtgctgatgctc
tcgagcaacaacatcctctcgcccgcgtcgggccggccgctggccatgccgcgtctggac
atggtcacggggctgttccacctgacccgcgagcgccccggcgcgaccggcgacggcaac
atctacggctcggtcgccgaggcgatcatggcctacgaccgcaaggtcctccacctgcag
gcgccgatcaagatccggctccccggggtgacgccggtcgccggcgtcgagctcgaggac
ggcgaggtctggctggcggagacgacgctgggccgtgtgctgttcaacgagcttctcccg
gccgggtacccgttcgtcaacgagccgctgcccaagaagcgtcaggccgcgatcatcaac
gacctggccgagcggtactcgatgaccgaggtcgcgcagtgcctcgaccgcctcaaggac
gccggcttctactgggccacccggtccggcgtcacgatggcgatcgacgacgtcgtggtc
ccgccgaacaagcaggagatcctcgacggctacgaggccaaggccgaccaggtcaacaag
cgctaccagcgtggtgcactcagccaccaggagcgcaacgacgagatggtcaagatctgg
acccaggcgtccgaagaggtcgccaaggccatggaggacaacttccccgaggacaacccg
atccccacgatcgtgaagtccggggcggcgggcaacatgacccaggtccggcagctcgcc
ggtatgcgtggtctggtcgccaaccccaagggtgagtacatcccccgcccgatcaaggcc
aacttccgtgagggcctgtcggtgctggagtacttcatctccacccacggcacccgcaag
ggtctggcggacaccgcgctgcggaccgccgactccggctacctgacccgtcgtctggtc
gacgtgtcgcaggacgtcatcgtccgcgagatcgactgcggcacctcgcgctcggtcgcc
atggccgtcaccgaggagaccagcgacggccgcctcatcccgcaccgctacatccgcacg
tcggtgtacgcgcgctgctcggcggaggaggtcgtcggtcccgacggcgaggtcatcgtc
gccaagggtggcgacctgggcgacccggcgctcgacgccctcgtggcggcaggtgtccgg
cagatcaaggtgcgcagcgccctgacctgcgagtccgccacgggcatctgcgcgatgtgc
tacggccgctcgatggccaccggcaagctggtcgacgtcggcgaggccgtcggcatcgtc
gccgcgcagtcgatcggtgagcccggtacgcagctgacgatgcgtacgttccaccagggt
ggcgtcgcgggcgacgacatcacgaccggtctgccccgtgtcaccgagctcttcgaggcc
cgggtccccaagggcaaggcgccgatcgccgacgtcgacggccgcatccgcatcgaggac
ggcgaccgcttctggaagatcaccctcaccccggacgacggcggcgaggagatcgtctac
gagaagctgtccaagcggcagtggctggcgatgaccacggtcgacggccaggagcgtccg
ctggccgacggcgaccacgtccaggtgggccagctgctcctcgagggcacggccgacccg
cacgaggtgctgcgtgtcatgggcccgcgcgaggtgcagctgcacctggtgcgtgaggtg
cagaaggtgtaccgcacgcagagcgtggacatccacgacaagcacatcgaggtcatcgtc
cggcagatgctgcgccgggtgacgatcatcgactcgggtgccacggagttcctgccgggt
gcgctcgccgagcgcggcgagttcgagtcggagaaccgtcgggtggtcgccgagggcaac
gagccggcctccggccgcccggtgctcatggggatcaccaaggcctcgctggcgacggag
tcgtggctgtccgcggcctcgttccaggagaccacccgcatcctcaccgatgccgcgatc
aacggaaagcgcgacaagctcgtcgggctcaaggagaacgtgatcatcggcaagctgatc
ccggccggtacgggcatcggccggtaccgcaacatccaggtccagccgacggaggaggcc
cgcgcggccgcctacgcgctgccgaactacgacgacggctactacagccccgacgtgttc
ggcacggggaccggtgccgcggtgccgctggacgactacgacttcgggcgcgactaccgg
tag

DBGET integrated database retrieval system