Pectobacterium parmentieri SCC3193: W5S_3393
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Entry
W5S_3393 CDS
T02514
Name
(GenBank) Exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pec
Pectobacterium parmentieri SCC3193
Pathway
pec03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
W5S_3393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pec03400
]
W5S_3393
Enzymes [BR:
pec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
W5S_3393
DNA repair and recombination proteins [BR:
pec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
W5S_3393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AFI91464
UniProt:
A0A0H3IBW3
LinkDB
All DBs
Position
complement(3673798..3677196)
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AA seq
1132 aa
AA seq
DB search
MFRIYHSNQLDILKELMVELIKRQPLADPFQQEVILVQSPGMAQWLQIELAGDFGIAANI
QFPLPGVFLWNMCRHVLSDIPKESAFSKDAMTWKLMHLLPDLLEQPDFSALNHYLQDDDN
QHKLHQLAGRVADLFDQYLIYRPEWIKAWQEGKQVDDLGGNQLWQSALWRALVDYTRELA
QPEWHHAILYQRFINTLGQAKECPKSLPPRVFICGISALPPIYLQALNALAQHIDVHLLF
TNPCRHYWSDIQDYKFLAKLKARNRRLHRFDGEQTDDVRPLFRDLSLAETLFNDDGKQSI
NNPLLASWGKLGRDNLYLLAELDNVQEIDAFVESDGENLLQTLQRDILELEDCAVVAVSH
ETQNTSTQKRLLALDDRSVDFHACHSPQREVEVLHDRLLAMMADDPELMPRDVIVMMADI
DSYTPFIQAVFGNAPDNRYLPFAISDQRARHAHPALQAVISLLDLPTSRFTAEQVLALLE
VPALAARFGIQEEGLRRLRLWVVESGVRWGLDDDNVRDLMLPPTGQHTWRFGLTRMLLGY
AMDSQVGDWQGVLPYDESSGLIAELAGQLAELLMQIHQWRQRLSQPRVLADWLPLCRELI
DTFFDADSETEAALALVEKQWQYVIGMGTMARYPHLVPISRLRDELSRRLDQERLSQRFL
AGSINFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGFDLMGRKIKRGDRSRRDDDRYL
FLEALLSAQHKLYISYIGRSIQDNTRRYPSVLVSELTEYIAQSYVLPGDEALDIDSSAGR
VMKHLCREHSRMPFDANNFLPVPLPLSFAAEWLAAANRKGEAQPDFDREVLSEKTSDRSV
SLDDLKRFYRHPVRAFFQLRLGVSFMLHSDELLDEEPFVVDSLNRYQLNSELLNTLINEG
DTEKLYRRARAAGELPYGAFGEIYWQEQQQDMAQLASRVRDELTPTLSVSREVDIILDGV
RVSGWLNQVQPDGLLRWRPGTLSMKDGITLWLEHLAYCAAGGQGESRLYGREDTAWRFAA
LSEAQAREHLSVMLDGYRQGMSKPLLLLNKAGSAWLAECYDRESDSLRSDEEAQNKARAR
LLQAWQGNMGMRGEGEDYYLQRIVRELDEKRMNEVVEAAQIWLLPPFRSNLA
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgtttagaatctatcactccaatcagttggatatcttgaaagaactgatggttgagctg
ataaaacgtcagccgcttgcggaccccttccagcaggaagtgattttggtgcaaagccca
gggatggcgcagtggctgcaaattgaactggctggggattttggtattgctgccaacatc
caattcccgttgcccggcgtttttttgtggaatatgtgtcgccatgtgctgtcagatatt
ccaaaagaaagcgccttcagcaaggatgcgatgacgtggaagctcatgcatttgctgcct
gatttgctggaacagcctgatttttcggcgcttaaccactatttacaggatgatgataac
cagcacaagctgcatcagttggccgggcgcgtggcggaccttttcgatcaatacctgatt
tatcgccctgagtggattaaagcatggcaagagggaaaacaggttgacgatctcggtggt
aatcaactgtggcagtcggcgctgtggcgtgcgttggtcgattacacccgcgaattggcg
cagcctgaatggcaccatgcgattctgtaccaacgcttcatcaacacgttaggtcaggca
aaagagtgtccgaaaagcctgccaccacgcgtttttatctgcggtatttcagcgctcccc
cctatctatttacaggcgttgaacgcgctggcacagcacattgatgtgcacctattgttt
actaatccctgccgccattattggagcgatattcaggattacaaatttctggcgaagcta
aaagcccgcaatcggcgcttacatcgctttgacggcgagcagactgatgacgttcgtccg
ttatttcgcgatctctcactggcagaaacgctgttcaatgacgatggtaaacagtcgatt
aataatccgttgttggcatcgtggggcaaactgggacgcgataacctttatctgctggct
gagctggataacgtgcaggaaatcgatgcttttgttgagtcggatggcgaaaacctactg
caaaccttgcagcgcgatattcttgagctggaagattgtgctgtggttgctgttagccac
gagacgcagaacaccagcacgcaaaaacgcctgctggcactcgacgatcgctcggttgat
tttcatgcttgccatagcccgcagcgtgaggttgaagtgcttcacgatcgactgttggct
atgatggcggacgatcctgaactgatgccgcgtgatgtcattgtgatgatggcggatatc
gatagctatacgccgtttattcaggcggtatttggcaacgcgccggataaccgctacctg
ccttttgccatctctgaccagcgtgcgcgacatgcacatcccgcattgcaagcggtgatt
agcctgctggatttacctaccagccgttttacggcggaacaggttctagcattgcttgaa
gtacctgcactggctgcccgtttcggtattcaggaagaagggctacggcgcttgcgcctg
tgggtggtggagtcgggtgtacgttggggattggatgatgacaacgtgcgcgatcttatg
ctgccaccaacgggtcagcatacgtggcgtttcggcttgacgagaatgctgctgggctat
gcgatggacagccaggttggcgattggcagggggtactgccttacgatgaatccagcggt
ttgattgcagagttggccggtcaactggctgaactgctgatgcagatccatcaatggcgt
cagcgtctgtctcaaccgcgtgtgcttgccgattggctaccgctctgtcgagagctgatc
gacaccttctttgatgctgacagcgagaccgaagccgcgctggcattggttgaaaagcag
tggcaatacgtaattggcatgggcacgatggcgcgttatccgcatctggtgccgatctct
cgactgcgtgatgagctgtcgcggcgcctcgatcaagaacgacttagccagcgctttttg
gccggctctatcaatttctgtacgctgatgcctatgcgctccatcccgtttaaggtcgtg
tgtttactgggcatgaatgatggtgtttacccacgaacactaccgccgcttgggttcgat
ctgatggggcgaaaaatcaaacgcggtgaccgtagccgacgtgacgatgatcgctaccta
tttcttgaggcgctcttgtcggcgcagcacaagctttatatcagctatatcgggcgctcg
atccaggataatacgcgccgctatccttcagtattggtcagcgaactgacggagtatatc
gcacagagttacgtcttgccgggtgatgaagcgctggatatcgatagcagcgcggggcgt
gttatgaagcacctctgccgtgagcatagccgtatgccttttgatgcgaataatttcttg
ccggtgccactgccgttgagctttgcggcagaatggttagcggcggcaaaccgaaaaggg
gaagcccagcctgattttgatcgtgaagtgctctccgaaaaaacgagcgatcgcagtgtc
agtttggacgatttgaagcgtttctatcgtcaccctgttcgagccttctttcaactgcgg
cttggcgtgagttttatgctgcacagtgacgaactgttggatgaagaaccctttgtggtt
gatagtcttaaccgctatcaattgaatagtgaactgcttaacaccttgattaatgaaggt
gatacggaaaaactgtatcgtcgtgccagagccgcgggcgagctgccctatggggcattc
ggtgaaatttactggcaggaacaacagcaggatatggcgcaactggcttcgcgtgtgcgc
gatgagttaacgccaacgctgtcggtgagtcgggaagtggacattatccttgacggtgtg
cgcgtcagcggttggttgaatcaggtacagccggatggtttgctgcgttggcgtccaggt
acgctttccatgaaagatggtattacgctgtggttggaacatctggcgtactgtgctgcg
ggtgggcagggcgaaagtcggctgtatggacgcgaagatactgcgtggcgctttgctgcc
ttgtcggaagcgcaggccagagaacacctgagcgtcatgctggatggatatcgtcaggga
atgagtaagccgctattactgctcaataaagcagggagtgcgtggttagctgaatgttat
gatcgtgaaagcgatagcctgcgatcggatgaggaagcacagaacaaagcgcgtgcccgc
ttgctgcaagcctggcagggtaatatgggaatgcggggcgaaggcgaagattattacctg
caacgtattgttcgtgaattggatgaaaaacgaatgaatgaagtggttgaagcggcacaa
atctggctactgccaccgttccgctctaatctggcttga
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