Pseudonocardia sp. EC080619-01: AD017_21105
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Entry
AD017_21105 CDS
T04234
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pecq
Pseudonocardia sp. EC080619-01
Pathway
pecq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pecq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AD017_21105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pecq03019
]
AD017_21105
03009 Ribosome biogenesis [BR:
pecq03009
]
AD017_21105
Enzymes [BR:
pecq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AD017_21105
Messenger RNA biogenesis [BR:
pecq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AD017_21105
Ribosome biogenesis [BR:
pecq03009
]
Prokaryotic type
rRNA processing factors
AD017_21105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
Motif
Other DBs
NCBI-ProteinID:
ALL83054
UniProt:
A0A0P0SFA0
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All DBs
Position
4503671..4507069
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AA seq
1132 aa
AA seq
DB search
MSVNDAPAGGTGGPSGEPVPTPDLPEKMRVHALAKLLGRASKDVLGALTTLGHEVRSVQS
NITRATAEQVLAALAPVAGEGDTEPSAAEPSPTEPSLAESSAAEPSVAEPVEPAAADLGQ
DAPAPERTGRRTGPRAAAHNPFGPADSGPAATRASAPAEPAAFAPAFAAPMFQAPTAPAA
PAAPPASAPAGTEDGEGTGGARKGRKGRKKQRDAEAVAEDEQATTPAGDTAAEDSADPAD
SDADSGGTDSADADADRSEDDADGDARRRRRRGRRGRGRGKGGDEQGENDQDADDTDSDS
DAGSGEGSGEETPAGSGDSGDGDGDEQSSGGSRRRRRRRRKGGSDVEDRSEDDPPNTVTK
VREARSDSGSSSSDDQVQGVRGSTRLEAKRQRRRDGRDAGRRRPPILSESEFLARRESVD
RQMVIRQLADRTEIGVLEDSVLVEHFITGGGSGSSMVGNIYLGRVQNVLPSMEAAFVDIG
RGRNAVLYAGEVNWDAAGLNGKARKIEQALSSGDQVLVQVTKDPVGHKGARLTTQISLAG
RFLVYVPSGGAAGISRKLPDTERKRLKEMLKEIVPSEAGVIIRTASEGVSHDALERDVRR
LQAQWEVVKEKSEKTGPGAPKAPTLLYEEPDMLVKVVRDQFNEDFSKLIVSGADAWDTVS
GYVEHVASELTERMHRHTGPSDVFTEYRIDEQLLKALDRKVWLPSGGTLVIDRTEAMTVV
DVNTGKFTGSGGNLEETVTRNNLEAAEEVVRQLRLRDIGGIIVVDFIDMVLEANRDLVLR
RLTECLARDRTRHQVAEVTSLGLVQMTRKRVGGGLLEHFSTPCEHCRGRGVVISTDPAEQ
HQHQHNGNGNGNGRGGNDNGNNGGGNGDGGGRRRRRRGGGDSGNGAPSGQSNGSDQGSDG
NGSDRNGSDRNGADHGSDRNGNGSAERSVDTTTAVAGVAAVAAAAQGGEGASAGTTVPDT
PESGTEPARSTPTGSAPAEDAPAGTGPAPADTTVTDAAPAPPVDPDAGPAVAEPVGELTG
SAVPSAGAEPAGRARKTEPAEPVEEAVPEAPAPRRRKVSRSAGAPVAAGEPVVITTSSPS
GESGAGETGTGEAATGDAPATPDHPEAAEAVSRPRRRRRTASRPAGPPQDGG
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtgaacgacgcgcccgccggtggtaccggcgggccctccggtgagcccgtcccg
accccggacctgccggagaagatgcgggtgcacgcactggccaagctgctcggccgggcc
agcaaggacgtcctcggagcgctgacgacgctcggccacgaggtccgcagcgtccagtcc
aacatcacccgcgcgacggccgagcaggtcctcgcggcactggccccggtggccggggag
ggtgacaccgagccgtcggccgccgagccgtcccccaccgagccgtccctggctgagtcg
tccgccgccgagccttccgtcgccgagccggtcgagccggccgccgcggacctcgggcag
gacgccccggcgcccgagcggaccgggcggcggaccggcccgcgggcggccgcacacaac
ccgttcggaccggccgactccgggccggccgcgacccgggcctccgcacccgcggagccg
gccgccttcgcgcccgccttcgccgccccgatgttccaggccccgaccgcgccggccgcc
cccgcggcgccgcccgcgtccgcgccggccggcacggaggacggcgagggcaccggtggc
gccaggaagggccgcaagggccggaagaagcagcgcgacgccgaggccgtggccgaggac
gagcaggccaccaccccggcgggcgacaccgccgccgaggactccgccgaccccgccgac
tccgacgccgactccggtgggacggactccgccgatgccgacgccgaccgatccgaggac
gacgccgacggcgacgcccgccggcgccgccgtcgtggccgtcgtggccgtggccggggc
aagggcggcgacgagcagggcgagaacgaccaggacgccgacgacaccgactccgactcc
gacgccgggtccggtgagggctccggtgaggagaccccggccgggtcgggggactccggt
gacggcgacggggacgagcagtcgtcgggcggctcccgccgccggcgccgccgccgtcgc
aagggcgggtccgacgtcgaggaccgctccgaggacgacccgccgaacaccgtcaccaag
gtccgtgaggcccgctccgactccggctcgtcgtcctccgacgaccaggtgcagggcgtg
cgtggctcgacccggctcgaggcgaagcgccagcgccgccgcgacggccgggacgccggc
cgccgccgcccgccgatcctgtccgagtccgagttcctggcccgccgggagtccgtcgac
cggcagatggtgatccgccagctggccgaccgcaccgagatcggcgtgctggaggactcg
gtcctcgtcgagcacttcatcaccggtggcggttccggctcctccatggtgggcaacatc
tacctcggccgggtgcagaacgtgctgccgtcgatggaggcggccttcgtcgacatcggg
cgcggccgcaacgccgtgctctacgccggtgaggtcaactgggacgccgccggtctcaac
ggcaaggcccgcaagatcgagcaggcgctgtcgtccggcgaccaggtgctggtgcaggtc
accaaggacccggtcgggcacaagggagcccggctgaccacgcagatctcgctggccggc
cggttcctggtctacgtgccctccggcggtgccgcgggcatctcccgcaagctgcccgac
accgagcgcaagcggctcaaggagatgctgaaggagatcgtcccgtccgaggccggggtg
atcatccggacggcgtccgagggcgtctcgcacgacgccctggagcgtgacgtccgccgg
ctgcaggcgcagtgggaggtcgtcaaggagaagtccgagaagaccggccccggcgcaccg
aaggccccgacgctcctctacgaggagccggacatgctggtcaaggtcgtccgggaccag
ttcaacgaggacttctcgaagctgatcgtgtccggggcggacgcctgggacaccgtctcg
ggctacgtcgagcacgtggcctccgagctgaccgagcggatgcaccggcacaccggcccg
tccgacgtcttcaccgagtaccggatcgacgagcagctgctcaaggcgctggaccggaag
gtctggctgccgtcgggcggcacgctggtgatcgaccggaccgaggcgatgaccgtcgtc
gacgtcaacaccggcaagttcaccggctccggcggcaacctcgaggagaccgtcacccgg
aacaacctggaggcggccgaggaggtcgtccgccagctccggctccgcgacatcggcggg
atcatcgtcgtcgacttcatcgacatggtgctggaggcgaaccgcgacctcgtgctgcgc
cgcctcaccgagtgcctggcccgcgaccgcacccggcaccaggtggccgaggtgacctcg
ctcggcctggtgcagatgacccgcaagcgggtcggcggggggctgctggagcacttctcg
acgccgtgcgagcactgccgtggccgtggcgtggtgatctccaccgatccggcggagcag
caccagcaccagcacaacgggaacggcaacggcaacggccggggcggcaacgacaacggc
aacaacggcggcggcaacggtgacggcggtggccgtcggcggcgtcgtcgcggcggcggg
gactccggcaacggggccccgtccggccagtcgaacggctccgaccagggctcggacggc
aacggctcggaccgcaacggctcggaccgcaacggtgccgaccacggttccgaccggaac
ggcaacggctcggccgagcgctccgtggacaccaccaccgccgtggccggcgtggccgcg
gtcgccgcggccgcacagggcggcgagggcgcgtcggccggcaccacggtccccgacacc
ccggagtccggcaccgagccggcacggtccacgccgaccgggtccgcgcctgccgaggac
gcgccggccggcaccgggcccgccccggcggacaccacggtcaccgacgccgcgcccgcc
ccgcccgtcgacccggacgccggtccggccgtcgccgagccggtcggcgagctgaccggc
tccgccgtcccgtccgccggcgccgagcccgccgggcgggcgcgcaagaccgagcccgcc
gagcccgtcgaggaggcggtgccggaggcacccgctccgcgccgtcgcaaggtcagccgc
tcggccggggccccggtcgcggccggtgagccggtcgtcatcaccacctcgtccccgtcc
ggtgagtccggcgcgggggagacggggacgggggaggccgccaccggcgacgcccccgcc
accccggaccacccggaggcggccgaggccgtctcccggccccgccgccgtcgtcgtacg
gcgtcccgccccgcgggcccgccccaggacggggggtga
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