Pseudomonas synxantha LBUM223: VO64_3964
Help
Entry
VO64_3964 CDS
T03769
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
pfb
Pseudomonas synxantha LBUM223
Pathway
pfb02020
Two-component system
pfb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VO64_3964
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VO64_3964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfb03021
]
VO64_3964
Transcription machinery [BR:
pfb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VO64_3964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
CCDC14
HTH_IclR
HTH_21
TrmO_C
Motif
Other DBs
NCBI-ProteinID:
AKA84510
LinkDB
All DBs
Position
complement(4468895..4470364)
Genome browser
AA seq
489 aa
AA seq
DB search
MGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNADPLADNIEQ
KPNPDVQEPSYQETAPTVDNLEDGEWNERIPNELPVDTAWEDVYQTSASSLPSNDDDEWD
FTTRTSVGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLDEILEAFDPEL
DIELDEIEAVLHRIQQFEPAGIGARTLSECLLLQLRQLPAKTPWLAEAKRLVADYIDLLG
SRDYSQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESSEAEYVVPDVIVRKDNERWLVE
LNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIV
EHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELKYFFSSHVS
TSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAKYRESLGIA
PSSERKRLM
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgggccagcagctgacgatgacaccgcagctgcaacaggccatccgcctgctccaattg
tcgaccctggacctgcaacaggaaatccaggaggccctggagtccaatccgatgctcgaa
cgccaggaagaaggcgacgacttcgacaatgccgaccctctggccgataacatcgagcaa
aaacccaatcccgacgtgcaggaaccctcctaccaggaaaccgccccgacggtggataac
ctcgaggatggcgaatggaacgaacgcattcccaacgagcttcccgtggataccgcgtgg
gaagacgtgtaccagaccagcgccagcagcctgccgagcaacgacgatgacgagtgggac
ttcaccacccgtacatctgtcggcgagagcctgcagagccatttgttgtggcaactgaac
ctggcaccgatgtccgacactgatcgcctgatcgcggtcaccctgatcgactgcatcaat
aaccagggctacctggacgagaccctcgacgagattcttgaagcctttgacccggagctg
gacatcgaactggacgaaatcgaagccgtcctgcatcgcatccagcaattcgagcccgcc
ggcattggcgcccgcaccctcagcgagtgcctgctgctgcaattgcgtcagttgccggcc
aagacgccctggctggccgaagccaagcgcctggtggcggactacatcgacctgctgggc
agccgcgactacagccagctgatgcgccgcatgaagctcaaggaagatgaattgcgccag
gtcatcgagctggtgcagagcctcaacccgcgcccgggctcgcaaatcgagtccagcgaa
gccgaatacgtcgtccccgacgtgattgtgcgcaaggacaacgagcgttggctggtggag
ctgaatcaggagtcggtgccccgcctgcgggtcaacccgcaatatgccggttttgtgcgc
cgcgccgataccagcgccgacaacaccttcatgcgcaaccagttgcaggaagcccgctgg
ttcatcaagagtctgcaaagccgcaacgagaccctgatgaaagtggcgacccagatcgtc
gagcaccagcgcggcttcctggaatatggcgacgaagccatgaagcctttggtactgcac
gatatcgccgaagcggtgggcatgcatgaatcaacgatttcccgggtgaccacgcagaaa
ttcatgcataccccacggggtatttatgagctgaaatactttttttccagccacgtcagc
acctccgaaggcggtgaatgctcgtccacggcgatccgcgcgatcatcaagaaactggtt
gccgcggaaaatcagaaaaagccgttgagtgacagcaagatcgctggtttactggaggca
caaggcattcaggtcgcccgtcgaaccgtcgccaagtaccgcgagtccctcgggatcgcg
ccttccagcgagcgtaagcgtttgatgtga
DBGET
integrated database retrieval system
