Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1: PFREUD_11830
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Entry
PFREUD_11830 CDS
T01252
Symbol
dnaE1
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pfr
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Pathway
pfr03030
DNA replication
pfr03430
Mismatch repair
pfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFREUD_11830 (dnaE1)
03430 Mismatch repair
PFREUD_11830 (dnaE1)
03440 Homologous recombination
PFREUD_11830 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfr03032
]
PFREUD_11830 (dnaE1)
03400 DNA repair and recombination proteins [BR:
pfr03400
]
PFREUD_11830 (dnaE1)
Enzymes [BR:
pfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PFREUD_11830 (dnaE1)
DNA replication proteins [BR:
pfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PFREUD_11830 (dnaE1)
DNA repair and recombination proteins [BR:
pfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PFREUD_11830 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
B1
Motif
Other DBs
NCBI-ProteinID:
CBL56705
UniProt:
D7GDU4
LinkDB
All DBs
Position
complement(1328248..1331820)
Genome browser
AA seq
1190 aa
AA seq
DB search
MASKNFAHLHVHTEYSMLDGAASNDKLFAEVARQGMPAVAMTDHGNMFGAYEFYQTAKKY
DGEQNPLVKPIIGIEAYVAPSTRLSRSPEFWGNRRDTGSPDTEGGKDVSGGGRYTHMTML
AANATGLHNLFKLSSLASYEGYYMKPRMDRELIAKYSEGIIGSTGCPSGEVQTRLRLGQF
EEACEAAAAYQDILGKENYYCELMDHGVDIEHQVRADLLRLAKRLKLPLLATNDSHYVTE
DQADDHDNLLCIGVGRNKDDPDRFRFNGSGYYIKTAAEMRALFPGLEEAADNTLAIAERI
ESYEEVFSYVDRMPQFDVPAGETQESWLRKKVKIGLKKHYGDHPSDAVMERVETELKVIE
PLGFSSYFLVVSDICDAARKMGVPVGPGRGSAAGSIIAYLTDIIAIDPLEHGLLFERFLN
PERVNPPDIDLDFDDRQRDKVIDYVTHKYGEEYTSQVNTFNKIKAKAAVKDANRILGYPF
SLGDRITKAMPPDVMGKGVPLNKLFDESNGRYSEGQEFRNLYNSDPDVKRVVDTGMGIEG
LIRGSGVHACAFILSSEKLLNLVPMHKRDKDGMIIAGFAYPQLEEMGLMKMDFLGLRNLG
IMDHCVKNIKRNRGEDVDLQKLPLDDAATYELMARGDTLGVFQLDGGAMRSLLRQMGPTC
FDDIIAVIALYRPGPMGANAHIEYADRKNGRRPIVPIHPELKDDLDEILAPTYHLIVYQE
QIMAIARKLAGYTLGGADLLRRAMGKKKKYILDENFKPFQKGMRDNGYSDESMQALWDVM
VPFAGYAFNKSHATGYALVSYWTAYLKANYPAEYGAALLTSVGDDKDKMALYLSDMRAQR
IKVLAPDVNASEKEFTAVGEDIRFGLGAIRNVGDSVVGGIVEARTDHGPAHDFFEFLDNV
PLSVCNKRCIESLIKAGAFDSMGHSRRALMDVFETAVDGVIDLKRNQANGQDDLFGDLGG
GDAESDPAMNHTVPDIPDWDKRTKLAFEREMLGLYVSDHPLRGLEHVLSAERTIGLGQIA
EQGAEADGHVEVICGMITQVQRKQTKKGAFWAIIDVEDLDASMQVLIFPKVYETCLTQLS
PDTIVRIRGRVVNKDESLEMQADELTLPDIRQSSGGPVTIRLPLVRCTPPIVAELRQVLT
AHPGSTEVRVQLVGPQSDTVLRVGDGLRVTNEQPLVADLKALLGPASVAV
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaagaacttcgctcacctgcacgtgcacaccgagtattcaatgctcgatggt
gcggcgagcaacgacaagctgttcgccgaggtggcccgccagggcatgcccgcagtcgcc
atgaccgaccacggcaatatgttcggggcctacgagttctaccagacggccaagaaatat
gacggtgagcagaacccgctggtgaagccgatcatcggcatcgaggcctatgtggccccc
tccacgaggctgtcgcgcagtccggagttctgggggaaccgtcgcgacaccggttcaccc
gacaccgagggcggcaaggatgtctcgggtggtgggcgctacacccacatgaccatgttg
gccgcgaacgccaccggcctgcacaatctgttcaagctgagttccctggccagctacgag
ggctactacatgaagccccgcatggaccgcgagctcattgcgaagtattccgaaggcatc
atcgggtccaccgggtgcccgtcgggtgaggtgcagacgcgactgcgcctggggcagttc
gaggaggcctgcgaggccgcggccgcctatcaggacatcctcggcaaggagaactactac
tgcgagctgatggaccatggggtcgacatcgagcatcaggtgcgcgccgacctgctgcgc
ctggcgaagcggctgaagctgccgctgctcgccacgaatgactcgcactatgtcaccgag
gaccaggccgacgaccacgacaacctgttgtgcatcggcgtgggccgcaacaaggatgat
cctgatcgcttccggttcaacggttcgggctactacatcaagaccgccgccgaaatgcgg
gccctgttcccgggtctcgaggaggcggccgacaacaccctggcgatcgccgagcgcatc
gaatcctatgaggaggtcttcagctacgtcgatcgcatgccgcaattcgacgtgccggcg
ggcgagacccaggagagttggctgcgcaagaaggtcaagatcgggctgaagaagcactac
ggcgatcatcccagtgacgcggtgatggagcgtgtcgaaacggagctgaaggtcattgag
ccgctcgggttcagttcctacttcctggtggtttccgatatctgcgatgccgcccgcaag
atgggcgtcccggtggggcccggacgtggatcggccgccggttcgatcatcgcctatctc
accgacatcatcgcgattgaccccctggagcacggcctgctgttcgagcggttcctgaat
cccgagcgggtcaacccgcccgatatcgacctcgacttcgatgatcgccagcgtgacaag
gtgatcgactatgtgacccacaagtatggcgaggaatacaccagccaggtcaacaccttc
aacaagatcaaggcaaaggctgccgtcaaggacgccaaccgcatcctgggctatcccttc
agcctgggcgatcgcatcaccaaggccatgccaccggatgtgatgggcaagggggttccg
ctcaacaagctcttcgatgagagcaacgggcgctactcggagggccaggaattccgcaat
ctgtacaactccgaccccgatgtgaagcgcgttgtcgataccggtatgggtatcgagggc
ctgatccgtggatccggcgtgcatgcatgtgccttcatcctgtccagcgagaagctgctc
aacctcgtgccgatgcacaagcgggacaaggacggcatgatcattgccggctttgcctac
ccgcagctcgaggaaatgggcctgatgaagatggacttcctcggcctgcgcaacctgggc
atcatggatcattgcgtgaagaacatcaagcgcaaccgtggcgaggacgtcgacctgcag
aaattgccgctggacgatgccgccacctatgagctgatggcccggggcgacaccctgggc
gtcttccagctcgatggtggtgcgatgcgttcgctgctgcgtcagatggggcccacctgc
ttcgacgacatcatcgccgtgatcgccctttaccgtcccggtccgatgggtgccaatgcc
cacatcgagtacgccgaccgcaagaacggtcgccgtccgatcgtgccgatccatcccgaa
ctcaaggatgacctggacgagatcctcgcacccacgtatcacctgatcgtctaccaggag
cagatcatggcgatcgcgcgcaagctggcgggttacaccctgggtggtgcagacctgctg
cggcgtgccatgggcaagaagaagaagtacatcctggacgagaacttcaagcccttccag
aagggaatgcgcgacaacggctactccgatgagtcgatgcaggctctgtgggatgtgatg
gttcccttcgccggctacgcattcaacaagtcacatgccaccggatatgccctggtgagc
tattggaccgcctatctcaaggcgaactatccggcagagtacggggctgccctgctcacc
tccgtgggtgacgacaaggacaagatggccctgtatctgtccgacatgcgcgcacaacgc
atcaaggtgctggcccccgatgtgaatgcctcggagaaggaattcaccgccgttggtgag
gacatccgcttcggcttgggcgcaatccgtaatgtcggcgattcggtggtcggggggatc
gtcgaggctcgcaccgatcacgggccggcccacgacttctttgagttcctggacaatgtg
ccgctgtcggtgtgcaacaagcggtgcatcgaatcgctgatcaaggcgggtgccttcgat
tccatgggccattcacggcgggcgctcatggacgtcttcgagacggccgtggatggggtg
atcgacctcaagcgcaaccaggccaacggacaggatgacctgttcggcgacctgggcggg
ggcgatgccgagtccgatcccgccatgaaccacacggttcccgatatccccgactgggac
aagcgcaccaagctggcctttgagcgcgagatgctcggcctgtacgtctccgaccatccg
ctgcgggggttggagcatgtgctgtccgccgaacgcacgatcgggctgggacagatcgcg
gagcagggtgccgaggccgacggacatgtcgaggtgatctgcggcatgatcacccaggtg
cagcgcaagcagacgaagaagggtgccttctgggcaatcatcgacgtcgaggacctggac
gccagcatgcaggtgctcatcttccccaaggtctacgaaacctgcctcacccaactgtcg
cccgacacgatcgtgcggatccggggtcgggtggtcaacaaggatgagtcgctggagatg
caggccgacgagctgaccctgcccgacatccgccagtccagtggggggccggtgacgatc
aggttgccgctggtgcgctgcacgccgccgatcgtcgccgagctgcggcaggtgctcacc
gcccatcccggttccaccgaggtgcgggtgcagctggtggggcctcaatcggacaccgtg
ctgcgcgtgggtgacggcctgcgggtgacgaacgagcaaccgctggtggccgacctcaag
gccctgctcggacccgcctccgtggccgtatag
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integrated database retrieval system
