Pseudomonas fluorescens SBW25: PFLU_3408
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Entry
PFLU_3408 CDS
T00899
Name
(GenBank) YcaO domain-containing protein
KO
K09136
ribosomal protein S12 methylthiotransferase accessory factor
Organism
pfs
Pseudomonas fluorescens SBW25
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfs03009
]
PFLU_3408
Ribosome biogenesis [BR:
pfs03009
]
Prokaryotic type
ribosomal protein modification factors
PFLU_3408
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YcaO_C
YcaO
OsmC
Motif
Other DBs
NCBI-ProteinID:
CAI2797619
UniProt:
C3KD59
LinkDB
All DBs
Position
1:complement(3768898..3771096)
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AA seq
732 aa
AA seq
DB search
MEIKVNFLDNLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCQ
TRNIPTDNIRLSQNNIVDPENRYNQIFKIQVELPADISDKDRQGILRSIDRCTVKKVVQA
GPEFVIEEVENLDADAQALLMPGSTSDGGTYIAGKDLPLEQTIANMSGILAGLGMKIEIA
SWRNIVPNVWSLHIRDAHSPMCFTNGKGATKEGALASALGEFIERLNCNFFYNDQFWGEE
LANAPFVHYPDERWFQPGPNDELPKEILDAYCLKVYNREGELRGSHLFDTNSGNEERGIV
SLPFVRQSDGEVVYFPSNLIENLYLSNGMSAGNTLAEAQVQCLSEIFERAVKREIIEGEF
ALPDVPAEVLAKYPGILAGIQGLEAQGFPVLVKDASLGGEFPVMCVTLMNPRTGGVFASF
GAHPSLEVALERSLTELLQGRSFEGLNDLPQPTFEGQAVTEPNNFVEHFIDSSGVVSWRF
FSAQSDYEFVEWDFTGAGEDSNAQEAATLFGILEGMGKESYMAVYEHLGATACRILVPDY
SEIYPVDDLIWDNTNKALFFREDILNLHSLNEEALQALVERLIESELDDYTDITTLIGIE
FDDNTAWGQLTILELKLLIFLALQQYEEAKECVEMFLQYNDNTAERGLFYQAMNAVLEME
LDDDLDLADYEANFRRMFGDERMDAVIGSVNGDVRFHGLTPTSMKLEGLDRHQRLIESYK
KLHAARATVTTG
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaaggtcaactttctcgacaacctccgacttgaagccaagttcgatgacttc
acggtgattgccgaccagccgattcgctataaaggcgatggctcggcaccggggccgttc
gattacttcctggcgtcgtcggccttgtgcgcggcgtacttcgtgaagttgtattgccag
acgcgcaatatccccaccgacaatattcgcctgtcgcagaacaacatcgtcgacccggaa
aaccgctataaccagatcttcaagattcaggtcgagttgccggcggacatctccgacaag
gaccgccagggcatcctgcgttccatcgaccgttgcacggtcaaaaaagtggtgcaggcc
ggaccggagttcgtcatcgaggaagtcgagaacctggacgccgatgcccaggccttgttg
atgcccggttcgacctccgacggcggcacctacatcgccggcaaagacctgccactggag
cagaccatcgccaacatgtccggcattctggccggactgggcatgaagatcgagatcgct
tcgtggcgcaatatcgtgcctaacgtgtggtcgctgcatatccgagatgcgcactcgccg
atgtgcttcaccaacggcaagggcgcgaccaaagagggcgccttggcgtcggcactgggc
gagttcatcgagcggcttaactgcaacttcttctacaacgaccagttctggggcgaagag
ctggcgaatgcgccgttcgtgcattacccggacgagcgctggttccagccaggccccaac
gacgaactgcccaaggaaatcctcgacgcctactgcctgaaggtctacaaccgcgaaggc
gagctgcgcggttcgcacctgttcgacaccaattccggcaatgaggaacgcggtatcgtt
tcgctgccgttcgtgcgccagtcggacggtgaggtggtgtacttcccgtccaacctgatc
gaaaacctctacctcagcaacggcatgagcgcggggaacaccctggccgaagcccaggtg
cagtgcctgtcggagatcttcgagcgcgccgtgaagcgtgaaatcattgaaggcgaattc
gccttgccggacgtaccggccgaggtgctggccaagtacccaggcatcctcgccggtatc
cagggcctggaagcccagggtttccctgtcttggtgaaagacgcgtcactgggcggtgaa
ttcccggtgatgtgcgtgaccctgatgaacccgcgtaccggcggcgtattcgcctccttc
ggcgcgcacccaagcctggaagtggcgctggaacgcagcctcaccgaactgctgcaaggc
cgcagtttcgaaggcctgaacgacttgccgcagccgaccttcgaaggccaggcggtgacc
gaaccgaacaacttcgtcgagcacttcatcgactccagcggcgtggtgtcgtggcgcttc
ttcagcgcccagtcggactacgaattcgtcgagtgggacttcacgggcgcaggcgaagac
tcgaatgcccaggaggccgcgaccctgttcggtattcttgaaggcatgggtaaagaatcc
tacatggcggtgtacgaacacctcggcgctaccgcgtgccgcatcctggtgccggactac
tcggaaatctacccggtggatgacctgatctgggacaacaccaacaaggcgctgttcttc
cgcgaggacatcctcaacctgcacagcctcaacgaggaagcgttgcaggcgttggtcgag
cgcctgatagagagcgagctggacgactacaccgatatcaccaccctgatcggcatcgag
ttcgacgacaacaccgcctggggccaactgaccatcctggaattgaagctgctgatcttc
ctggccttgcagcaatatgaagaggccaaggagtgtgtggagatgttcctgcagtacaac
gacaacaccgccgagcgtggcctgttttaccaggcaatgaatgcggtgctggagatggag
ctggacgacgacctggacctggcggattacgaggccaacttccgccgcatgttcggcgat
gagcggatggatgcagtgattggttcggtgaacggcgatgtgcgcttccatggcctgacg
ccgaccagcatgaagctggaggggttggaccggcatcaacgtttgatcgagagctacaag
aagctgcatgcggcacgtgccaccgtcaccaccggctga
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