Pyrococcus furiosus DSM 3638: PF1615
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Entry
PF1615 CDS
T00075
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pfu
Pyrococcus furiosus DSM 3638
Brite
KEGG Orthology (KO) [BR:
pfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfu03016
]
PF1615
Enzymes [BR:
pfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PF1615
Transfer RNA biogenesis [BR:
pfu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PF1615
Prokaryotic type
tRNA splicing ligases
PF1615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
LAGLIDADG_3
Intein_splicing
Motif
Other DBs
NCBI-ProteinID:
AAL81739
UniProt:
Q8U0H4
LinkDB
All DBs
Position
complement(1505326..1508238)
Genome browser
AA seq
970 aa
AA seq
DB search
MIILRVVNVAVPLKRIDKIRWEIPKFDKRMKVPGRVYADDVLIEKMRQDRTLEQAANVAM
LPGIYKYSIVMPDGHQGYGFPIGGVAAFDIKEGVISPGGIGYDINCLAPGTKVLTEHGYW
LKIEEMPEKFKLQRLRLYNIEEGHNDFSRVAFVAERNIEKDETAIRIVTETGTLIEGSED
HPVLTPQGYVYLKNIKEGDYVIVYPFEGVPYEEKKGIIIDESAFEGEDPQVIKFLKERNL
LPLRWEDPKIGTLARILGFALGDGHLGEMGGRLVLAFYGREETLRELKKDLESLGIKANL
YVREKNYRIKTESGEYSGKTVLAELRVSSRSFALLLEKLGMPRGEKTKKAYRIPVWIMEA
PLWVKRNFLAGFFGADGSIVEFKGTTPLPIHLTQAKDVALEENLKEFLYDISRILEEFGV
KTTIYKVNSKKSVTYRLSIVGEENIRNFLGKINYEYDPKKKAKGLIAYAYLKFKESVKKE
RRKAMEISKKIYEETGNIDRAYKAVKDIVNRRFVERTIYEGERNPRVPKNFLTFEEFAKE
RGYEGGFVAEKVVKVERIKPEYDRFYDIGVYHEAHNFIANGIVVHNCGVRLIRTNLTEKD
VRPKIKQLVDTLFKNVPSGVGSQGKVRLHWTQIDDVLVDGAKWAVDQGYGWERDLERLEE
GGRMEGADPDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDEEIAKAYGLFEGQVVV
MVHTGSRGLGHQVASDYLRIMERAIRKYGIPWPDRELVSVPFQSEEGQRYFSAMKAAANF
AWANRQMITHWVRESFQEVFRQDPEGDLGMEIVYDVAHNIGKVEEHEVDGKKVKVIVHRK
GATRAFPPGHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMAETFGSTCHGAGRVLS
RAAATRQYRGDRIRDELLRRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVA
RMRPIGVAKG
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
gtgattattctaagggtggtgaatgtggcagtacccctaaagaggattgacaaaatcaga
tgggaaattccaaagttcgataagcgaatgaaagtgcccggtagagtctatgcagatgat
gtattgattgaaaagatgaggcaggacaggacattagagcaagctgcaaatgttgcaatg
cttcctgggatatataagtactctatcgtaatgccagacggtcatcagggttatgggttc
ccaattggtggtgtagcggccttcgatattaaagaaggagtcataagccctggaggaatc
ggctacgacattaactgtcttgctccagggactaaagtcctaacagagcatggttattgg
ctaaaaatcgaggagatgcctgaaaagttcaagcttcagaggctgaggctttataatatc
gaggaagggcacaacgacttctctagagtagcctttgttgctgaaaggaacattgaaaag
gatgaaacggcaataaggatagttactgagactgggacattaatagagggaagtgaagat
caccccgttcttactcctcagggttatgtctatctcaagaacattaaagaaggagactat
gttatagtgtatccctttgagggagtcccatacgaagaaaagaagggaatcataatagac
gaaagcgcttttgaaggtgaagatccacaggtgataaagttccttaaagaaagaaacctc
ctaccacttcgctgggaagatccaaagatcggaactcttgcaaggattcttggttttgcc
ctgggagatggtcatctaggagagatggggggtaggttagtcttagcattctatggaaga
gaggaaacacttagagaacttaagaaagatcttgaatcactaggtattaaagcaaatctc
tatgtccgagaaaagaactacaggataaagactgaaagtggtgaatatagtggcaaaact
gttttagctgagttaagagtttcctcaagaagttttgctctcttacttgaaaaactagga
atgcctcgtggtgagaaaactaagaaggcttatcgcattccagtttggataatggaagct
cctctctgggtaaaaagaaacttcttggctggattctttggtgcagatggtagcattgtt
gaatttaaaggcactacaccacttccaatacacttaacccaggctaaagacgtagcactt
gaagaaaatctaaaagagttcttatatgatatttcaagaatccttgaggagtttggagta
aagactacgatttacaaagttaattcaaagaaaagtgtcacttatcgcctgtctattgta
ggagaggagaacatcagaaacttcctgggtaaaattaactatgagtatgatcccaagaag
aaagcaaagggtcttattgcctatgcttaccttaagttcaaggagagtgtgaaaaaagag
agaagaaaagcaatggagatatccaagaagatatatgaagaaactggaaacatagataga
gcatataaggccgtcaaggacatagttaatagacgctttgttgagaggacaatttatgaa
ggggaaagaaatccaagagttccaaagaactttctaacttttgaggagtttgcaaaagag
agaggatatgaaggaggctttgttgcagaaaaggtcgttaaagttgaacgcataaagcca
gaatacgatcggttctatgatatcggagtttaccatgaggctcataatttcatagcaaat
gggatagttgtccacaactgtggggtgaggttaattagaacaaatcttacagagaaagac
gtaaggccaaagataaaacagttagttgacactttatttaagaatgttccctccggcgtt
ggtagtcagggtaaggtcaggcttcactggactcagattgatgacgtcttagttgatgga
gcaaagtgggcggttgatcaaggatatggatgggagagggatcttgagagattggaagaa
ggagggagaatggaaggagctgacccagatgcagttagccagagggctaagcaaagagga
gctcctcagcttggctcattaggttctggaaaccacttccttgaggttcaagttgtggat
aagatattcgatgaggagatagcgaaagcctatggattgtttgaaggacaagttgttgtg
atggttcatactggatcaagaggattaggccatcaagttgcaagtgattacctgagaata
atggagagagccataagaaagtacggcataccttggccggacagagagttggttagcgtt
ccattccaaagtgaagaaggacagaggtacttctcagctatgaaagctgctgcaaacttt
gcctgggcaaacaggcagatgattactcactgggttagggagagctttcaggaggtgttc
agacaggatccagagggagacttgggaatggaaattgtatacgatgtagctcacaacata
ggtaaagtagaggagcatgaagtagatggaaagaaagttaaggttatagtccacagaaaa
ggtgctacaagggctttcccacctgggcatgaggccattccgaagatttatagagatgta
ggacaaccagttctaattccaggttcaatgggaactgcaagctatgttctggctggaact
gagggagctatggctgagacttttggaagcacatgtcacggagctggaagagttcttagt
agggctgcggcaacaaggcaatataggggagatagaataagagatgaactactaaggaga
ggaatttacgtgagggcggcaagtatgagggtggttgcagaagaggctccaggtgcgtac
aagaatgtagacaatgtagttaaggttgtaagtgaggcaggaatagcgaagctagtggca
agaatgaggccaataggagtggcaaaaggatga
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