Phaeobacter inhibens DSM 17395: PGA1_c09790
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Entry
PGA1_c09790 CDS
T02192
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pga
Phaeobacter inhibens DSM 17395
Pathway
pga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGA1_c09790 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pga03019
]
PGA1_c09790 (deaD)
03009 Ribosome biogenesis [BR:
pga03009
]
PGA1_c09790 (deaD)
Enzymes [BR:
pga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PGA1_c09790 (deaD)
Messenger RNA biogenesis [BR:
pga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PGA1_c09790 (deaD)
Ribosome biogenesis [BR:
pga03009
]
Prokaryotic type
rRNA helicases
PGA1_c09790 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFO90698
UniProt:
A0AA86DAU4
LinkDB
All DBs
Position
1008360..1010501
Genome browser
AA seq
713 aa
AA seq
DB search
MPSGGAPRSKRNEILKTALEQALQARGYEHLTPVQEAVTAAELDQSDLLVSAQTGSGKTV
GFGLAMAPTLLGDAEKLDRADLPLALVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGM
DMRDERRALERGAHIVVATPGRLRDHIMRGSINLSQVRAVVLDEADEMLDLGFREDLEFI
LGESPEDRRTLMFSATVPTGIARLAETYLKDHQRIKTVAEASQHADIEYQMLAVAQRDVE
NAVINVLRFHESPNAIVFCNTRAVVNRMTTRLSNRGFSVVALSGELSQAERSNALQSLRD
GRARVCVATDVAARGIDLPKLDLVIHADLPSSHETLLHRSGRTGRAGRQGVSALIVPPKA
KGKALRLLRSAKITAETSPAPSADDVRTRDFERLLGDKAWSEPVSENETAPVAELVERFS
PEQLAVAYLRLFHDRHSAPEELSDPQHDKREREERAPFGPSVWFAVSGGRKAGAEPRRLL
PALCNAGGLTKDDIGAIRVQFDQSYVEVRESSAESFWGAVKHDGLEEGANVTRLDKAPDL
PKSPRPQGRDGGGFRDDKRGHRGQDRGDRGGERGERKPYGDKPRSDKPSYGDKPRGEKSY
GDKPRASKPYGDKPRGDKPAYGDKPRFDKPKRTGEGGKATVTARGSSDRGATPSAPAKPA
VPGKPKGDWSNPGKSGRKGPPPPKGKPNSKKNKARAVVSGKPGGSARPQRKGS
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
gtgccctctggcggcgcgccccgcagcaagcgaaatgaaatcttgaaaacagcactcgaa
caagcgcttcaggcgcgcggctacgagcatttgacacccgtgcaagaggccgtcaccgca
gccgagctggatcagtccgaccttctggtgtcggcacagaccggatccggcaaaaccgta
ggctttggcctggcgatggcacccacattgttgggcgacgccgagaaactggaccgtgcc
gacctgccgctggcattggtcattgcgccgacgcgcgaactggcgttgcaggtgaaacgc
gaactgggctggctctatgccgaggccggcgcgcatgtggtctccaccgttggtggtatg
gatatgcgcgatgaacggcgcgcgttggaacgtggcgcccatattgttgtggcaacgccc
ggtcgcctgcgcgatcacatcatgcgtggctctatcaacctgtcgcaggtccgcgccgtg
gtgctggacgaagccgatgagatgctggatctgggcttccgtgaggatctggagttcatt
ctgggcgaatccccggaagaccgccgcaccctcatgttctcggcaactgtgccgactggt
attgcgcgcctggctgagacctatctcaaggatcatcagcggatcaaaaccgtggcggaa
gcctcgcagcacgcggatattgaatatcagatgctggccgtggcgcagcgggatgttgag
aacgcggttatcaacgttctgcgctttcacgagtcgcccaatgcgattgtgttctgcaac
acccgtgcggtggtgaaccggatgaccacgcggctgagcaatcgcggattttccgtggtt
gccctgtccggcgagctgtctcaggcggagcgcagcaacgcgctgcagtctctgcgggac
gggcgcgcgcgggtttgtgtggcaacagatgttgcggcgcgcggtatcgatctgccgaaa
ctggatctggtgattcatgcggatctgccgtccagccatgagacgctgttgcaccgctcg
ggccggaccggtcgtgccgggcgtcagggtgtgtcggcgttgattgtaccgccaaaggcc
aagggcaaggccctgcgcctcctgcggtctgccaagatcactgccgaaaccagcccggcg
cccagtgccgatgatgtccggacccgcgactttgagcgccttctgggtgacaaggcttgg
agtgaaccggtcagcgaaaacgagaccgccccggtggcggagctggtcgagcggttctcg
cccgagcagctggcggtcgcctatctgcgtctgttccacgatcgccacagcgcccccgag
gagctgagcgatccgcagcacgacaagcgcgagcgtgaagagcgtgcaccctttggtccc
tctgtgtggtttgcggtcagcggtggccgcaaggccggtgctgaaccgcgtcggctgctg
ccagcgctgtgcaatgccggtggtctgactaaggatgatatcggagcgatccgggttcag
tttgatcaaagctacgtggaagtgcgcgaaagcagcgccgaaagcttctggggcgcggtg
aaacacgacggtctggaagagggggcaaatgtcacccgtctggacaaggcaccggatctg
cccaaatcgccacgcccacagggccgtgatggtggtggtttccgcgatgacaaacgcggc
caccgtggacaggatcgcggagatcgcggcggtgaacgcggtgagcgcaagccctatggc
gataagcctcgttctgacaaaccgtcttacggcgataagccacgtggcgaaaaatcatat
ggtgacaagccgcgtgccagcaaaccctatggggataaaccgcgtggcgacaaacctgcc
tatggcgacaagccgcgtttcgataaacccaaacgcacgggtgagggcggcaaggccacg
gtgaccgcgcgcggatcatcggatcggggggcaacgccgtcggcgcctgccaaacctgcg
gttccgggcaagcccaagggcgattggtccaatccggggaaatccggtcgcaaggggcca
ccaccgccgaagggcaagcccaacagcaagaaaaacaaggcccgtgcagtcgtttccggg
aaacccggcggcagcgcacggcctcagcgcaagggcagctga
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